View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217Ase18 (Length: 479)
Name: NF0217Ase18
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Ase18 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 396
Target Start/End: Complemental strand, 32700615 - 32700211
Alignment:
| Q |
10 |
gatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagccgtgctctagatgcccacactgctgaacctgatgtgcttaggatgta |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32700615 |
gatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagcagtgctctagatgcccacacttctgaacctgatgtgcttaggatgta |
32700516 |
T |
|
| Q |
110 |
cacttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaatttagcaatttcttttgatatggttacaaatttttcgatacaaac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32700515 |
cacttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaatttagcaatttcttttgatatggttacaaatttttccatacaaac |
32700416 |
T |
|
| Q |
210 |
atataaccagtgcacagcgagcctaaaaattagaagcctttgtttgatgtaattagtggcaattaca-----------------ctgtgttaattacact |
292 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32700415 |
atataaccagtgcacactgagcctaaaaattagaagcctttgtttgatgtaattagtggcaattacactggtttttcttgaggtctgtgttaattacact |
32700316 |
T |
|
| Q |
293 |
aaatgtatgttatttgagaaattaccatgacattctttacnnnnnnncttcttctt-cgagtgtcgtaacgtattgttcaagacataacatgtctttgta |
391 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32700315 |
aaatatatgttatttgagaaattaccatgacattctttactttttttcttcttcttccaagtgtcgtaacgtattgttcaagacataacatgtctttgta |
32700216 |
T |
|
| Q |
392 |
acttt |
396 |
Q |
| |
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||||| |
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| T |
32700215 |
acttt |
32700211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 32300676 - 32300732
Alignment:
| Q |
112 |
cttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaattta |
168 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||| | |||||||||| |
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| T |
32300676 |
cttccggtagtgtattttttggggctttgagcatatagggggcataatgagaattta |
32300732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 171 - 457
Target Start/End: Complemental strand, 3956455 - 3956155
Alignment:
| Q |
171 |
aatttcttttgatatggttacaaatttttcgatacaaacatataaccagtgcacagcgagcctaaaaattagaagcctttgtttgatgtaattagtggca |
270 |
Q |
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|||||||||| || |||||||||| ||||| |||||||| |||| ||||| |||| |||| ||||| ||||||||||||||||||||||||| |||||| |
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| T |
3956455 |
aatttctttttatgtggttacaaagttttcaatacaaacttatatccagtacacattgagcttaaaagttagaagcctttgtttgatgtaattggtggca |
3956356 |
T |
|
| Q |
271 |
attaca-----------------ctgtgttaattacactaaatgtatgttatttgagaaattaccatgacattctttacnnnnnnncttcttcttcgagt |
353 |
Q |
| |
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|||||| | |||||||||||||||||| | |||||||| | ||||||| |||||||||||||| |||||| | ||| |
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| T |
3956355 |
attacatcgatttttatcgaggtcagtgttaattacactaaatatttgttatttaaaaaattacaatgacattctttacttacttttttcttc--caagt |
3956258 |
T |
|
| Q |
354 |
gtcgtaacgtattgttcaagacataacatgtctttgtaactttatgtatggatttgatactatttcttttgcagatacaaataggaggccagaataaaag |
453 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||| |||| ||||| ||||| |||||||| ||||||| ||||| || |
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| T |
3956257 |
atcgtaacgtattgttcaagacataagatgtccttgcaacttcatgtatggatttaataccgtttctcttgcatatacaaatcagaggcca-aataagag |
3956159 |
T |
|
| Q |
454 |
gtaa |
457 |
Q |
| |
|
|||| |
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|
| T |
3956158 |
gtaa |
3956155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 3956622 - 3956538
Alignment:
| Q |
10 |
gatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagccgtgctctagatgcccacactgctgaacctgatg |
96 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||| |||| | |||||||||||| |
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| T |
3956622 |
gatgtccttaggaattacatgaaaccaaattcaaacgagtaaagactagtagc--agctctagatgctcacatttctgaacctgatg |
3956538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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