View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217Ase20 (Length: 110)
Name: NF0217Ase20
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Ase20 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-45
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 46215382 - 46215287
Alignment:
| Q |
7 |
taatatggccagcaccatgatcataaggagttgaaaattcagcagaagaagcgtctctaagaggtttaatagtattatcatgaacataagctgttg |
102 |
Q |
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| T |
46215382 |
taatatggccagcaccatgatcataaggagttgaaaattcagcagaagaagcatctctaagaggtttaatagtattatcatgaacataagctgttg |
46215287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 366633 - 366712
Alignment:
| Q |
15 |
ccagcaccatgatcataaggagttgaaaattcagcagaagaagcgtctctaagaggtttaatagtattatcatgaacata |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||| |
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| T |
366633 |
ccagcaccatgatcataaggagttgaaaattcagcagaagaaacaactccgagaggtttaataatattatcatgaacata |
366712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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