View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0217Ase22 (Length: 178)
Name: NF0217Ase22
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Ase22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 159; Significance: 6e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 6e-85
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 30251988 - 30251826
Alignment:
| Q |
7 |
taataaatgtaaaattaaagtaaagagagcaagatgtagagctcccttcaatccaaagaaagattaaactaaaggtggtaaggctccctagatatggaag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30251988 |
taataaatgtaaaattaaagtaaagagagcaagatgtagagctcccttcaatccaaagaaagattaaactaaaggtgataaggctccctagatatggaag |
30251889 |
T |
|
| Q |
107 |
ccacaaaactaccacaaagaacaagatgggtagaattgagggatccatagctaagcagctcta |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30251888 |
ccacaaaactaccacaaagaacaagatgggtagaattgagggatccatagctaagcagctcta |
30251826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 5e-73
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 30238191 - 30238034
Alignment:
| Q |
11 |
aaatgtaaaattaaagtaaagagagcaagatgtagagctcccttcaatccaaagaaagattaaactaaaggtggtaaggctccctagatatggaagccac |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30238191 |
aaatgtaaaattaaagtaa-gagagcaagatgtagagctcccttcaatccaaagaaagattaaactaaaggtgataaggctccctagatatggaagccac |
30238093 |
T |
|
| Q |
111 |
aaaactaccacaaagaacaagatgggtagaattgagggatccatagctaagcagctcta |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
30238092 |
aaaactaccacaaagaacaagatgggtagagttgagggacccatagctaagcagctcta |
30238034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1755 times since January 2019
Visitors: 2393