View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0217Ase23 (Length: 83)

Name: NF0217Ase23
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0217Ase23
NF0217Ase23
[»] chr8 (1 HSPs)
chr8 (10-77)||(34860039-34860106)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-31
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 34860039 - 34860106
Alignment:
10 aaccaataagataagctgcatcatggacacccacatgtaaatgcgtgtgaaatgtcaagctacaatta 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34860039 aaccaataagataagctgcatcatggacacccacatgtaaatgcgtgtgaaatgtcaagctacaatta 34860106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1430 times since January 2019
Visitors: 2391