View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217Ase27 (Length: 227)
Name: NF0217Ase27
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Ase27 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 7522352 - 7522154
Alignment:
| Q |
23 |
gatatacaattcacagagtgtacttagatgttgaaacactccacagagagatttaagattgagtatggaatttatctgaagatactctactttggaatga |
122 |
Q |
| |
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|||| |||||||| | |||||||||||||||||||| ||||||| ||||||||| | |||||||||||| | |||||| |||| ||||| |||||||||| |
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| T |
7522352 |
gatacacaattcagacagtgtacttagatgttgaaagactccactgagagatttcaaattgagtatggattctatctgtagatcctctagtttggaatga |
7522253 |
T |
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| Q |
123 |
ttgactgcttgctgtaatatatctgaagatactctacaaagatctacttccctgatatacgtgtgttgtggaattgaaactagcttataacaatcatta |
221 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7522252 |
ttgactacttgctgtaatatatctgaagatactctacaaagatctacttccctgatatatgtgtgttgtggaattgaaactagcttataacaatcatta |
7522154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 7484289 - 7484097
Alignment:
| Q |
29 |
caattcacagagtgtacttagatgttgaaacactccacagagagatttaagattgagtatggaatttatctgaagatactctactttggaatgattgact |
128 |
Q |
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||||||||||||||||| |||||||||||| ||||||| |||||||| | |||||||||||| | ||| | |||| ||||||||||||||||||||||| |
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| T |
7484289 |
caattcacagagtgtacctagatgttgaaagactccactaagagatttcaaattgagtatggattctatattaagagactctactttggaatgattgact |
7484190 |
T |
|
| Q |
129 |
gcttgctgtaatatatctgaagatactctacaaagatctacttccctgatatacgtgtgttgtggaattgaaactagcttataacaatcatta |
221 |
Q |
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| T |
7484189 |
agttgctgtaatatatctgaagatactctacaaagatctacttccctgatatatgtgtgttgtggaattgaaactagcttataacaatcatta |
7484097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 7530436 - 7530301
Alignment:
| Q |
7 |
attccttgcaatcggagatatacaattcacagagtgtacttagatgttgaaacactccacagagagatttaagattgagtatggaatttatctgaagata |
106 |
Q |
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|||||||||||| || ||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7530436 |
attccttgcaattggtgatatacaattcatacagtgtacttagatgttgaaagactccacagagagatttaagattgagtatggaatttatctgaagata |
7530337 |
T |
|
| Q |
107 |
ctctactttggaatgattgactgcttgctgtaatat |
142 |
Q |
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| T |
7530336 |
ctctactttggaatgattgactgcttgctgtaatat |
7530301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 7716282 - 7716401
Alignment:
| Q |
23 |
gatatacaattcacagagtgtacttagatgttgaaacactccacagagagatttaagattgagtatggaatttatctgaagatactctactttggaatga |
122 |
Q |
| |
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|||| |||||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |
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| T |
7716282 |
gatacacaattcagacagtgtacttagatgttgaaagactccacagagagatttataattgagtatgaaacctatctgaagatactctactttggaatga |
7716381 |
T |
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| Q |
123 |
ttgactgcttgctgtaatat |
142 |
Q |
| |
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||||||||| |||||||||| |
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| T |
7716382 |
ttgactgctagctgtaatat |
7716401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 7496694 - 7496575
Alignment:
| Q |
23 |
gatatacaattcacagagtgtacttagatgttgaaacactccacagagagatttaagattgagtatggaatttatctgaagatactctactttggaatga |
122 |
Q |
| |
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|||| |||||||| | |||||||||||||||||||| || |||||||||||||||| |||||||||| || ||| | |||||||||||||||||||||| |
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| T |
7496694 |
gatacacaattcagacagtgtacttagatgttgaaagacaccacagagagatttaaaattgagtatgaaacctatatcaagatactctactttggaatga |
7496595 |
T |
|
| Q |
123 |
ttgactgcttgctgtaatat |
142 |
Q |
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|||||||||||||||||||| |
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| T |
7496594 |
ttgactgcttgctgtaatat |
7496575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 7502878 - 7502688
Alignment:
| Q |
29 |
caattcacagagtgtacttagatgttgaaacactccacagagagatttaagattgagtatggaatttatctgaagatactctactttggaatgattgact |
128 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| |||||||| | |||||| ||| || ||||||||||||||||||||||||| ||||||| |
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| T |
7502878 |
caattcacacagtgtacttagatgttgaaagactccactaagagatttcaaattgagcatgaaaaacatctgaagatactctactttggaataattgact |
7502779 |
T |
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| Q |
129 |
gcttgctgtaatatatctgaagatactctacaaagatctacttccctgatatacgtgtgttgtggaattgaaactagcttataacaatcat |
219 |
Q |
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| T |
7502778 |
acttgctttaatatcttctctgtgacctttctaagagttactttcttgatatatgtgtgttgaggaattgaaactagcttataacaatcat |
7502688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 7720118 - 7720304
Alignment:
| Q |
29 |
caattcacagagtgtacttagatgttgaaacactccacagagagatttaagattgagtatggaatttatctgaagatactctactttggaatgattgact |
128 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| |||||||| | |||||||||||| | ||||| |||| |||||| |||||||||||||||| |
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| T |
7720118 |
caattcacagagtgtacctagatgttgaaagactccactaagagatttcaaattgagtatggattctatctcaagagactctagtttggaatgattgact |
7720217 |
T |
|
| Q |
129 |
gcttgctgtaatat-atctgaagatactctacaaagatctacttccctgatatacgtgtgttgtggaattgaaactagcttataacaa |
215 |
Q |
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||| || |||| || ||| |||| | |||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||| |
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| T |
7720218 |
gctggcggtaacatcgtctctctgacctct-ctaagaattacttccctgatatatgtgtgttgtggaattgaaactagattacaacaa |
7720304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 7126852 - 7126965
Alignment:
| Q |
29 |
caattcacagagtgtacttagatgttgaaacactccacagagagatttaagattgagtatggaatttatctgaagatactctactttggaatgattgact |
128 |
Q |
| |
|
|||| |||| ||| |||||||||||||||| | ||||| ||||||||| | ||| |||||| |||||||| ||||||||||||||| |||||||||||| |
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| T |
7126852 |
caatgcacacagtctacttagatgttgaaagagtccactgagagatttcaaattcagtatgtcatttatcttaagatactctacttttgaatgattgact |
7126951 |
T |
|
| Q |
129 |
gcttgctgtaatat |
142 |
Q |
| |
|
||||| |||||||| |
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|
| T |
7126952 |
gcttgttgtaatat |
7126965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 10477897 - 10477964
Alignment:
| Q |
22 |
agatatacaattcacagagtgtacttagatgttgaaacactccacagagagatttaagattgagtatg |
89 |
Q |
| |
|
||||| ||| |||| | |||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
10477897 |
agatacacagttcagacagtgtacttagatgttgaaagactccacagagagatttaaaattgagtatg |
10477964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 7716443 - 7716476
Alignment:
| Q |
184 |
tgtgttgtggaattgaaactagcttataacaatc |
217 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |
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|
| T |
7716443 |
tgtgttgtggaattgaaactagattataacaatc |
7716476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 7530276 - 7530228
Alignment:
| Q |
167 |
tacttccctgatatacgtgtgttgtggaattgaaactagcttataacaa |
215 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| ||| ||||| |
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| T |
7530276 |
tacttccctgatatgtttgtgttgtggaattgaaactagattacaacaa |
7530228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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