View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217Ase28 (Length: 170)
Name: NF0217Ase28
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Ase28 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 45797465 - 45797619
Alignment:
| Q |
7 |
taattttatcttaaaaattgtacgttaaacattttaaaatttgaaaagttgacacatnnnnnnngaattctgctattctcccaataaaatttgtccactc |
106 |
Q |
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| T |
45797465 |
taattttatcttaaaaattgtacattaaacattttaaaatttgaaaagttgacacataaaaaaagaattatgctcttctcccaataaaatttgttcactc |
45797564 |
T |
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| Q |
107 |
tcaaccaaactttctaaaatacatgtgcatgaattaagtcacatatgtgttaaac |
161 |
Q |
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| T |
45797565 |
tcaaccaaactttctaaaatacatgtgcatgagttaagtcacgtatgtgttaaac |
45797619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 42791329 - 42791418
Alignment:
| Q |
72 |
aattctgctattctcccaataaaatttgtccactctcaaccaaactttctaaaatacatgtgcatgaattaagtcacatatgtgttaaac |
161 |
Q |
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| T |
42791329 |
aattatgctattcttccaacaagatttgttcactcccaaccaaactttcaaaaatatccttgcgtgagttaagtcacgcatgtgttaaac |
42791418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 4965479 - 4965426
Alignment:
| Q |
75 |
tctgctattctcccaataaaatttgtccactctcaaccaaactttctaaaatac |
128 |
Q |
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| T |
4965479 |
tctgctattctcccaataaaatttgctcactttcaatcaaactttcaaaaatac |
4965426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 34997131 - 34997059
Alignment:
| Q |
77 |
tgctattctcccaataaaatttgtccactctcaaccaaactttctaaaatacatgtgcatgaattaagtcaca |
149 |
Q |
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| T |
34997131 |
tgctcttctcccattaaaatttgttcactcccaaccaaacttccaaaaatacctccgcatgacttaagtcaca |
34997059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 26425199 - 26425121
Alignment:
| Q |
82 |
ttctcccaataaaatttgtccactctcaaccaaactttctaaaatacatgtgcatgaattaagtcacatatgtgttaaac |
161 |
Q |
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| T |
26425199 |
ttcttccaataagatttgttcattcccaaccaaactttcgaaaatatct-tgcatgagttaagtcacgcatgtgttaaac |
26425121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 18839114 - 18839024
Alignment:
| Q |
71 |
gaattctgctattctcccaataaaatttgtccactctcaaccaaactttctaaaatacatgtgcatgaattaagtcacatatgtgttaaac |
161 |
Q |
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| T |
18839114 |
gaattctgctcttctcataataaaatttgctcactcccatccaaacttccgaaaatacccctgcatgagttaagtcacgcatgtgttaaac |
18839024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 31588328 - 31588384
Alignment:
| Q |
71 |
gaattctgctattctcccaataaaatttgtccactctcaaccaaactttctaaaatac |
128 |
Q |
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| T |
31588328 |
gaattatgctcttctcccaagaaaatt-gttcactcccaaccaaactttctaaaatac |
31588384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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