View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217Ase3 (Length: 797)
Name: NF0217Ase3
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Ase3 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 644; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 7 - 705
Target Start/End: Complemental strand, 24247775 - 24247076
Alignment:
| Q |
7 |
taatttaagaaatggactcctctctcactctcgttctccacaaaaagtacatgctattccaacaaaatgaaacttcgttaactagcctggttggtacttc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
24247775 |
taatttaagaaatggactcctctctcactctcgttctccacaaaaagtacatgccattccaacaaaatgaaacttcattaactagcctcgttggtacttc |
24247676 |
T |
|
| Q |
107 |
attatttaaccatgtttcttatcctcactagtcaccaaccttacttgccaagatatcatttcctaattttttcctaacccttacccaacactcattttca |
206 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24247675 |
attatttaaccatgtttcttatcctcaccagtcaccaaccttacttgccaagatatcatttcctaattttttcctaacccttacccaacactcattttca |
24247576 |
T |
|
| Q |
207 |
ttccaaaacgacgccacttcttctgattcagtgatggaagaagaaactaccgccaccacgaggcagctgcgaccaaccacctccaccgaaaccctaacac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24247575 |
ttccaaaacgacgccacttcttctgattcagtgatggaagaagaaactaccgccaccacgaggcagctgcgaccaaccacctccaccggaaccctaacac |
24247476 |
T |
|
| Q |
307 |
ttgcagccaagaagttcctccgcaagttgtggaattatctgatttcaaacaccaagaggcagcagctggtggctcaacttccgttggatgtcgtggctga |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
24247475 |
ttgcagccaagaagttcctccgcaagttgtggaattatctgatttcaaacaccaagaggaagcagccggtggctcaacttccgttggatgtcgtggctga |
24247376 |
T |
|
| Q |
407 |
aatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaattgatagaagttttgcaaataaa |
506 |
Q |
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| T |
24247375 |
aatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagttgtggaattctctcatctcaattgatagaagttttgcaaataaa |
24247276 |
T |
|
| Q |
507 |
caccttcgagtgtcaaccaaacgccaccatgtcgtcacaagctcattgaacttcccaccaaagttaactgtaatgtcttacccattggactcttttc-ac |
605 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24247275 |
caccttagagtgtcaaccaaacgccaccatgtcgtcacaagctcattgaactacccaccaaagttaactgtaatgtcttacccattggactcttttcaac |
24247176 |
T |
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| Q |
606 |
tcaactctagtttcacctctgatgccacgttctcctttgaccactcttccctttatcaactaaatactacgttctatagccgcattctcgttggttcttg |
705 |
Q |
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| T |
24247175 |
tcaactctagtttcacctctgatgccacgttctcctttgatcactctttcctttatcaactaaatactacgttctatagccgcattctcgttggttcttg |
24247076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 23897000 - 23896904
Alignment:
| Q |
385 |
ttccgttggatgtcgtggctgaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctc |
481 |
Q |
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| T |
23897000 |
ttccgtttgatctcgtggttgaaatcctgtgcagactccctgtcaagttcctcctacaattccgctgcgtctgcaagtcatggaattctctaatctc |
23896904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 24806014 - 24805942
Alignment:
| Q |
246 |
gaagaaactaccgccaccacgaggcagctgcgaccaaccacctccaccgaaaccctaacacttgcagccaaga |
318 |
Q |
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| T |
24806014 |
gaagaaaccaccgccaccacaaggcagccgagaccaaccacctccaccgcaaccctaacacttccagtcaaga |
24805942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 405 - 483
Target Start/End: Complemental strand, 24805897 - 24805819
Alignment:
| Q |
405 |
gaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaa |
483 |
Q |
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|||||||| ||||||||||| ||||| | |||| | |||||||||| |||||||| || ||||||||||||||||||| |
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| T |
24805897 |
gaaatcctctgcagactccccgtcaaatctctcctccgattccgctctgtctgcaaatcctggaattctctcatctcaa |
24805819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 412 - 546
Target Start/End: Complemental strand, 45693712 - 45693578
Alignment:
| Q |
412 |
tgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaattgatagaagttttgcaaataaacacct |
511 |
Q |
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|||| |||||||| ||||||| ||| ||| | |||||||| | |||||||||||||||||||| |||||||||||| | ||||| || || ||||| |
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| T |
45693712 |
tgtgtagactcccggtcaagtttcttctacaactccgctgcatatgcaagtcgtggaattctctaatctcaattgatcccaaatttgctaagaatcacct |
45693613 |
T |
|
| Q |
512 |
tcgagtgtcaaccaaacgccaccatgtcgtcacaa |
546 |
Q |
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||| |||||||||||| || |||| || |||||| |
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| T |
45693612 |
tcgcatgtcaaccaaacaccgccatctcatcacaa |
45693578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 397 - 483
Target Start/End: Original strand, 24512250 - 24512336
Alignment:
| Q |
397 |
tcgtggctgaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaa |
483 |
Q |
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||||| ||||||| || || |||||||||| ||||| ||| | | |||| | |||||||||||||| ||||||||||| ||||||| |
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| T |
24512250 |
tcgtgactgaaattctatgtagactccctgccaagttcctcgtgcaattcggatgcgtctgcaagtcatggaattctctgatctcaa |
24512336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 475
Target Start/End: Complemental strand, 25611850 - 25611760
Alignment:
| Q |
385 |
ttccgttggatgtcgtggctgaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctct |
475 |
Q |
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| T |
25611850 |
ttccgtttgatgtcgtcgttgaaatcctttgtaggctcccggtcaagttcctccttcaattctgttgcgtctgcaagtcatggaattctct |
25611760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 399 - 488
Target Start/End: Complemental strand, 41223 - 41134
Alignment:
| Q |
399 |
gtggctgaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagtcgtggaattctctcatctcaattgat |
488 |
Q |
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|||||||||||||| || |||||||||| || | ||| ||| |||||| |||||||||||||| ||||||||||| ||||||| |||| |
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| T |
41223 |
gtggctgaaatcctatgtcgactccctgtgaaattcctcctacaattccgttgcgtctgcaagtcatggaattctctaatctcaaatgat |
41134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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