View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217Ase4 (Length: 804)
Name: NF0217Ase4
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Ase4 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 449
Target Start/End: Complemental strand, 33555425 - 33554983
Alignment:
| Q |
7 |
atggtagtgattggctaacagttnnnnnnntgttaagaatgaatcataggttaattgtgttcacttcaaatgcaacaaaagaggcttctgaacgcattgc |
106 |
Q |
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| T |
33555425 |
atggtagtgattggctaacagttaaaaaaatgttaagaatgaatcataggttaattgtgttcacttcaaatgcaacaaaagaggcttctgaacgcattgc |
33555326 |
T |
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| Q |
107 |
ctatgaatggaactatgttgtggaaaataaatgtgagttcctcttattttctgctaagatcagattatataccgtaaatgtaaatgacaatttcgatgac |
206 |
Q |
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| T |
33555325 |
ctatgaatggaactatgttgtggaaaataaatgtgagtacctcttattttctgctaagatcagattatataccgtaaatgtaaatgacaatttcaatgac |
33555226 |
T |
|
| Q |
207 |
tttgtgaaattgcagatggaaatgatggaatgggaagaggtcattgtttacatagagcagaatcatatccaatgaacacaacaacaaagtcactagtcct |
306 |
Q |
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| T |
33555225 |
tttgtgaaattgcagatggaaatgatggaatgggaagagatcattgtttacatagagcagaatcatatccaatgaacacaacaacaaaatcactagtcct |
33555126 |
T |
|
| Q |
307 |
aatgaactattacagaaatgtcctaaattccaatgaagcatgtagggataactcatccccattgattcgaaagatgcatacttgctataaagatgctggt |
406 |
Q |
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| T |
33555125 |
aatgaactattacagaaatgtcctaaattccaatgaagcatgtaaggataactcatccccattgattcgaaagatgcatacttgctataaagatgctggt |
33555026 |
T |
|
| Q |
407 |
aaccgatggcctaactacattgctgtagacttttacaaggtac |
449 |
Q |
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| T |
33555025 |
aaccgatggcctaactacattgctgtagacttttacaaggtac |
33554983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 507 - 756
Target Start/End: Complemental strand, 33554915 - 33554665
Alignment:
| Q |
507 |
gaatggatcagttgattgtgcattcagagaggtgatggtgggggagctccagaagcattagatgttgcaaatcgaaatttgtttgtgtgagttcagtcga |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33554915 |
gaatggatcagttgattgtgcattcagagaggtgatggtgggggagctccagaagcattagatgttgcaaatcgaaatttgtttgtgtgagttcagtc-- |
33554818 |
T |
|
| Q |
607 |
aatttatatatgcaatgtatgaaactatactttcatgtcgnnnnnnnggttacatgggatgtagttcttacatgcttaa-aacatatgttatatggacgg |
705 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
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| T |
33554817 |
-atttatatatgcaatgtatgaaactatactttcatgtcgtttttttggttacatgggatgtagatcttacatgcttaagaacatatgttatattgacgg |
33554719 |
T |
|
| Q |
706 |
-ttccgnttctgncc-cccctatatatttagttaa-nagcctacttttgntttg |
756 |
Q |
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||| | ||||| || || |||||||||||||||| ||| |||||||| |||| |
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| T |
33554718 |
tttctgtttctgtcctccactatatatttagttaataagcatacttttgttttg |
33554665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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