View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217Ase7 (Length: 263)
Name: NF0217Ase7
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Ase7 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 14959035 - 14959139
Alignment:
| Q |
153 |
agggtgagtgttagagaatatgtgatgtctagatattgtatatttttgttgtctacatataacatcagtaagaaagtaacatagctaggctttcatcgat |
252 |
Q |
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| T |
14959035 |
agggtgagtgatagagaatatgtgatgtcgagatattgtatattttttttgtctacatataacatcagtaagaaagtaacatagctaggctttcatcgat |
14959134 |
T |
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| Q |
253 |
aatta |
257 |
Q |
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| T |
14959135 |
aatta |
14959139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 14958027 - 14958117
Alignment:
| Q |
8 |
ccgtggatattttagagaatgtatacatcttgagaaagaaaaacatattaaaagtaatgtaatagatcggcgatgtaatgaaaagattaag |
98 |
Q |
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| T |
14958027 |
ccgtggatattttagagaatgtatacatcttgagaaagaaaaacatattaaaagtaatgtgatagatcggcgatgtaatgaaaagattaag |
14958117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 14958940 - 14958998
Alignment:
| Q |
123 |
ttgaatgagtgttagagaatatatatttttagggtgagtgttagagaatatgtgatgtct |
182 |
Q |
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| T |
14958940 |
ttgaatgagtgtt-gagaatatatttttttaggatgagtggtagagaatatgtgatgtct |
14958998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 14959002 - 14959034
Alignment:
| Q |
153 |
agggtgagtgttagagaatatgtgatgtctaga |
185 |
Q |
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| T |
14959002 |
agggtgagtgatagagaatatgtgatgtctaga |
14959034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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