View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0217Ase8 (Length: 293)

Name: NF0217Ase8
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0217Ase8
NF0217Ase8
[»] chr8 (15 HSPs)
chr8 (8-287)||(6273533-6273812)
chr8 (10-287)||(6287786-6288063)
chr8 (9-287)||(6330875-6331153)
chr8 (9-265)||(6320413-6320669)
chr8 (8-287)||(6362207-6362487)
chr8 (11-261)||(7458066-7458316)
chr8 (14-261)||(7470471-7470718)
chr8 (8-280)||(6409213-6409485)
chr8 (8-269)||(6423239-6423500)
chr8 (10-279)||(6351324-6351593)
chr8 (44-281)||(6389997-6390234)
chr8 (40-234)||(6369011-6369205)
chr8 (148-260)||(6449911-6450023)
chr8 (136-208)||(6456366-6456438)
chr8 (148-234)||(6262464-6262550)
[»] chr2 (2 HSPs)
chr2 (46-208)||(42692288-42692450)
chr2 (168-233)||(42689373-42689438)
[»] chr3 (1 HSPs)
chr3 (115-260)||(36745622-36745767)
[»] chr5 (1 HSPs)
chr5 (148-230)||(9606023-9606105)
[»] chr1 (1 HSPs)
chr1 (167-215)||(47127114-47127162)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 6273533 - 6273812
Alignment:
Q  8 gagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6273533 gagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaat 6273632  T
Q  108 atttgcatctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6273633 atttgcatctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctct 6273732  T
Q  208 atcagaaggcgaaggccgtgtggggaacttggatccttaacagccactcctctagataacaaaaaaggaagatatcatta 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6273733 atcagaaggcgaaggccgtgtggggaacttggatccttaacagccactcctctagataacaaaaaaggaagatatcatta 6273812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 287
Target Start/End: Original strand, 6287786 - 6288063
Alignment:
Q  10 gtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaatat 109  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  6287786 gtttgcatcttaaaccaccatttagcatctttcaagtcaccgtgacctacctctacaagttctttccagaatgcttggagttcagaatcttgtgcaatat 6287885  T
Q  110 ttgcatctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctat 209  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  | | ||||||||||||||||||||||||||||||||| || | |||    
T  6287886 ttgcatctgacttgtagtagaaatacacatattcttcaacccatgacttaattgctgtccatatctctaatccatcagcagcataagggtaatcttttat 6287985  T
Q  210 cagaaggcgaaggccgtgtggggaacttggatccttaacagccactcctctagataacaaaaaaggaagatatcatta 287  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||| | |||||||    
T  6287986 cagaaggcgaaggccgtgtggggaagttggatcctcaacagccactcctctaggtaacaagaaaggaaaaaatcatta 6288063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 6330875 - 6331153
Alignment:
Q  9 agtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaata 108  Q
    |||||||||||||| ||||||| ||||||| ||||| ||||| ||||| |||||||||| |||| ||||||||||||| ||||||||||||||  ||| |    
T  6330875 agtttgcatcttaaaccaccatgtagcattcttcaaatcaccatgacccacctctacaacttctctccaaaatgcttgcagttcagaatcttgcgcaaca 6330974  T
Q  109 tttgcatctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctcta 208  Q
       ||||||||| ||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||||||||||||||    
T  6330975 gcagcatctgacgtgtagtagaaactcacatattcttcaacccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctcta 6331074  T
Q  209 tcagaaggcgaaggccgtgtggggaacttggatccttaacagccactcctctagataacaaaaaaggaagatatcatta 287  Q
    ||||||||||||  || ||||||||| ||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  6331075 tcagaaggcgaattccatgtggggaagttggatcctcaacagccactcctctagataacaagcaaggaagatatcatta 6331153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 6320413 - 6320669
Alignment:
Q  9 agtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaata 108  Q
    |||||||||||||| ||||||| ||||||| ||||| ||||| ||||| |||||||||| |||| ||||||||||||| ||||||||||||||  ||| |    
T  6320413 agtttgcatcttaaaccaccatgtagcattcttcaaatcaccatgacccacctctacaacttctctccaaaatgcttgcagttcagaatcttgcgcaaca 6320512  T
Q  109 tttgcatctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctcta 208  Q
        |||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||||||||||||||    
T  6320513 gcaacatctgacttgtagtagaaattcacatattcttcaacccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctcta 6320612  T
Q  209 tcagaaggcgaaggccgtgtggggaacttggatccttaacagccactcctctagata 265  Q
    ||||||||||||  || ||||||||| ||||||||| ||||||||||||||||||||    
T  6320613 tcagaaggcgaattccatgtggggaagttggatcctcaacagccactcctctagata 6320669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 6362207 - 6362487
Alignment:
Q  8 gagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaat 107  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  6362207 gagtttgcatcttaaaccaccatgtagcattcttcaagtcaccatgaccgacctctacaagttctttccagaatgcttggagttcagaatcttgtgcaat 6362306  T
Q  108 atttgcatctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctct 207  Q
    |  |||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||| |||| |||||| | |||||||||||||||||||    
T  6362307 agatgcatctgacttgtagtagaaattgacatattcatcaacccatgatttaatagcagcccatatttctagtccatctgaagcataagggtagtcctct 6362406  T
Q  208 atcagaaggcgaaggccgtgtggggaacttggatccttaacagccactcctctagataacaa-aaaaggaagatatcatta 287  Q
    || ||||| ||||| || | ||  ||| | || |||| ||| |||||||||||| | |||||  ||||||||||| |||||    
T  6362407 attagaagtcgaagaccatatgctgaagtagggtcctcaacggccactcctctatagaacaagcaaaggaagataacatta 6362487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 7458066 - 7458316
Alignment:
Q  11 tttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaatatt 110  Q
    |||||||||||| ||||||| | |||||  | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||   ||| ||     
T  7458066 tttgcatcttaaaccaccatgttgcattcctaaagtcaccatgacccacctctacaagttctttccaaaatgcttggagttcagaatctttcacaacatc 7458165  T
Q  111 tgcatctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatc 210  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  7458166 tgcatcagacttgtagtagaaattcacatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcataaggatagtcctctatc 7458265  T
Q  211 agaaggcgaaggccgtgtggggaacttggatccttaacagccactcctcta 261  Q
    ||||| ||||  || ||||| |||  |||||||| ||| ||||||||||||    
T  7458266 agaagtcgaacaccatgtggagaagctggatcctgaactgccactcctcta 7458316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 7470471 - 7470718
Alignment:
Q  14 gcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgc 113  Q
    ||||||||| ||||||| | |||||  | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||   ||| || |||    
T  7470471 gcatcttaaaccaccatgttgcattcctaaagtcaccatgacccacctctacaagttctttccaaaatgcttggagttcagaatctttcacaacatctgc 7470570  T
Q  114 atctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcaga 213  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| | ||||||| |||||||||||||||    
T  7470571 atcagacttgtagtagaaattcacatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaaacataaggatagtcctctatcaga 7470670  T
Q  214 aggcgaaggccgtgtggggaacttggatccttaacagccactcctcta 261  Q
    || ||||  || ||||| |||  |||||||| ||| ||||||||||||    
T  7470671 agtcgaacaccatgtggagaagctggatcctgaactgccactcctcta 7470718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 6409213 - 6409485
Alignment:
Q  8 gagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaat 107  Q
    |||||| |||||||| ||||||| | ||||  ||||||||||| || || || ||||||||||||||||| ||||||||||| || ||||| | | |||     
T  6409213 gagttttcatcttaaaccaccatgttgcatccttcaagtcaccatggcccacttctacaagttctttccagaatgcttggagctcggaatcatctgcaac 6409312  T
Q  108 atttgcatctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctct 207  Q
    |  |||||||  |||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || ||||||    
T  6409313 agctgcatctagcttgtaatagaaatttacatattcttcaacccatgacttaatagcagcccatatctctaatccatcagtagcataaggataatcctct 6409412  T
Q  208 atcagaaggcgaaggccgtgtggggaacttggatccttaacagccactcctctagataacaaaaaaggaagat 280  Q
    |||| ||||||||  || |||||  |  ||||||||||||||||||||||||||||||||||  |||||||||    
T  6409413 atcaaaaggcgaacaccatgtggaaattttggatccttaacagccactcctctagataacaagcaaggaagat 6409485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 6423239 - 6423500
Alignment:
Q  8 gagtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaat 107  Q
    ||||||||||||||| ||||||| | ||| | || |||||||| ||||| |||||||||||||| ||||| |||||||||||||||| ||||||| ||||    
T  6423239 gagtttgcatcttaaaccaccatgtggcactctttaagtcaccatgacccacctctacaagttccttccagaatgcttggagttcagcatcttgtgcaat 6423338  T
Q  108 atttgcatctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctct 207  Q
        |||||||| |||||||||||| ||||||||||| ||||||||| ||| ||| ||||||||||||||| |||||| | ||||||||| || |||||     
T  6423339 ggcagcatctgatttgtagtagaaactcacatattctccaacccatgtcttgatagcagcccatatctctagtccatccgaagcataaggataatcctca 6423438  T
Q  208 atcagaaggcgaaggccgtgtggggaacttggatccttaacagccactcctctagataacaa 269  Q
    |||| |||||||| ||||||||| |||  |||||||| |||||||||||||||  |||||||    
T  6423439 atcaaaaggcgaatgccgtgtggtgaagctggatcctcaacagccactcctctgcataacaa 6423500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 6351324 - 6351593
Alignment:
Q  10 gtttgcatcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaatat 109  Q
    ||||||||||||| ||||||| | ||||| |||| |||||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||      
T  6351324 gtttgcatcttaaaccaccatgtggcattcttcaggtcaccatgaccaacctctacaagttccttccagaatgcttggagttcagcatcttgtgcaatgg 6351423  T
Q  110 ttgcatctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctat 209  Q
      ||||| |||||||| |||||||||||||||||  ||||||||||||||||  |||||||||| |||| |||||||| ||||||||| || ||||||||    
T  6351424 cagcatcagacttgtaatagaaattcacatattcaccaacccatgacttaatggcagcccatatttctagtccatcagaagcataaggataatcctctat 6351523  T
Q  210 cagaaggcgaaggccgtgtggggaacttggatccttaacagccactcctctagataacaaaaaaggaaga 279  Q
    ||||||||| || |||   || ||   |||||||| |||||| ||||||||| |||||||  ||||||||    
T  6351524 cagaaggcggagaccggtaggagaggctggatcctcaacagctactcctctaaataacaagcaaggaaga 6351593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 44 - 281
Target Start/End: Original strand, 6389997 - 6390234
Alignment:
Q  44 agtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacatattc 143  Q
    ||||||| ||||| || ||||||||||||||||||||||||| ||||||   ||| | |  || || |  ||||||||||||||||||||| ||||||||    
T  6389997 agtcaccatgacccacttctacaagttctttccaaaatgctttgagttcctcatcatctttaacatctttatctgacttgtagtagaaattgacatattc 6390096  T
Q  144 ttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtggggaacttggatcc 243  Q
     |||||||||||||||||| ||||||||||||||| ||||||| ||||||| || || |||||||||||||| || || || ||||| ||  ||||||||    
T  6390097 atcaacccatgacttaatagcagcccatatctctagtccatcaacagcatatggataatcctctatcagaagacgcagaccatgtggagattttggatcc 6390196  T
Q  244 ttaacagccactcctctagataacaaaaaaggaagata 281  Q
    ||||||||||| ||||||||||||||  ||||||||||    
T  6390197 ttaacagccacacctctagataacaagcaaggaagata 6390234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 6369011 - 6369205
Alignment:
Q  40 ttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaatatttgcatctgacttgtagtagaaattcacat 139  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||| ||||||   ||| | |  || || |  |||||||| ||| |||||||| ||||    
T  6369011 ttcaagtcaccatgacctacttctacaagttctttccaaaatgctttgagttcctcatcatctttaacatctttatctgactcgtaatagaaattgacat 6369110  T
Q  140 attcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtggggaa 234  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||| | |||||| || || |||||||||||||| || || || |||||||||    
T  6369111 attcatcaacccatgacttaatagcagcccatatctctagtccatctgaagcatatggataatcctctatcagaagacgcagaccatgtggggaa 6369205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 6449911 - 6450023
Alignment:
Q  148 acccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtggggaacttggatccttaa 247  Q
    ||||||| ||||||| || ||||||| |||| ||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||   ||||||| ||    
T  6449911 acccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcctctatcacaagtcgaaggccgtgaggggaagagggatcctcaa 6450010  T
Q  248 cagccactcctct 260  Q
    |||| | ||||||    
T  6450011 cagctaatcctct 6450023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 6456366 - 6456438
Alignment:
Q  136 acatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctcta 208  Q
    ||||| |||| |||||||| ||||||| || ||||||| |||| ||||||| |||||||||||||||| ||||    
T  6456366 acatagtcttgaacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcttcta 6456438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 6262464 - 6262550
Alignment:
Q  148 acccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtggggaa 234  Q
    ||||||| ||||||| || |||| || || | ||||||| ||||||||||||| |||||||| || || ||||| ||||| ||||||    
T  6262464 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaa 6262550  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 42692288 - 42692450
Alignment:
Q  46 tcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtccaa-tatttgcatctgacttgtagtagaaattcacatattct 144  Q
    |||||||||||||||||||| |||||||||||  | |||||||||||||||||||||| || ||| | ||||||   ||||||| ||    ||||| |||    
T  42692288 tcaccgtgaccaacctctacgagttctttccaccaagcttggagttcagaatcttgtctaagtatgt-catctgtggtgtagtacaaggagacatagtct 42692386  T
Q  145 tcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctcta 208  Q
    | |||||||| ||| ||  |||||||||||||||||||||||  |||||||||||| |||||||    
T  42692387 tgaacccatgtctttattgcagcccatatctctaatccatcatgagcataagggtaatcctcta 42692450  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 42689438 - 42689373
Alignment:
Q  168 ccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtgggga 233  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||    
T  42689438 ccatatctctaatccatcaacagcataagggtagtcctctatcagaagacgaagtccgtatgggga 42689373  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 260
Target Start/End: Complemental strand, 36745767 - 36745622
Alignment:
Q  115 tctgacttgtagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaa 214  Q
    |||| ||||||||| ||| | ||||| ||||  ||||||| ||||||| || |||||||||||||||||||| ||||| |||||||||| | |||||  |    
T  36745767 tctgtcttgtagtacaaactaacatagtctttcacccatgccttaatagcatcccatatctctaatccatcaacagcaaaagggtagtcttttatcacta 36745668  T
Q  215 ggcgaaggccgtgtggggaacttggatccttaacagccactcctct 260  Q
    ||||||| ||||| || | ||| | ||||| |||||||| ||||||    
T  36745667 ggcgaagtccgtggggtgcactggcatcctgaacagccattcctct 36745622  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 9606105 - 9606023
Alignment:
Q  148 acccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtgg 230  Q
    ||||||||||||||| || |||||||||| | ||||||| | ||||||||||||||||| |||| ||| |||||||| |||||    
T  9606105 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtgg 9606023  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 47127114 - 47127162
Alignment:
Q  167 cccatatctctaatccatcagcagcataagggtagtcctctatcagaag 215  Q
    ||||||| || ||||||||| ||||| |||||||||| |||||||||||    
T  47127114 cccatatttccaatccatcaacagcaaaagggtagtcttctatcagaag 47127162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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