View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0217Eco12 (Length: 152)

Name: NF0217Eco12
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0217Eco12
NF0217Eco12
[»] chr7 (7 HSPs)
chr7 (4-140)||(15664590-15664726)
chr7 (5-143)||(15676426-15676563)
chr7 (4-143)||(14606529-14606668)
chr7 (4-143)||(16025706-16025845)
chr7 (4-133)||(16173192-16173321)
chr7 (4-133)||(16103524-16103653)
chr7 (15-143)||(17849153-17849281)
[»] scaffold0289 (2 HSPs)
scaffold0289 (4-143)||(4916-5055)
scaffold0289 (4-143)||(13749-13888)
[»] chr5 (1 HSPs)
chr5 (86-124)||(37027411-37027449)
[»] chr1 (2 HSPs)
chr1 (15-73)||(14483446-14483504)
chr1 (86-138)||(14532175-14532227)
[»] scaffold0400 (1 HSPs)
scaffold0400 (21-73)||(7183-7235)
[»] scaffold0365 (1 HSPs)
scaffold0365 (21-73)||(7827-7879)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 5e-48; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 15664590 - 15664726
Alignment:
Q  4 caattacttcttcatcatctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaaggacaagtgtgaatgtgaacaaaatccata 103  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||| ||||||||||  |||||||||||||||||    
T  15664590 caattgcttcttcatcatcattcaaaatcttttccaaactacctttctccatgaactcgtaaaccaaaaacgacaagtgtgtgtgtgaacaaaatccata 15664689  T
Q  104 tagcttcacaatcttacgatgccgaatttctttcaga 140  Q
    |||||||||||| |||||||||||||||||| |||||    
T  15664690 tagcttcacaatgttacgatgccgaatttctgtcaga 15664726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 15676426 - 15676563
Alignment:
Q  5 aattacttcttcatcatctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaaggacaagtgtgaatgtgaacaaaatccatat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |||||||| || ||||||||| ||||||||    
T  15676426 aattacttcttcatcatctttcaaaatcttttccaaactacctttctccatgaactcgtaaaccaaaaacgacaagtgggagtgtgaacaatatccatat 15676525  T
Q  105 agcttcacaatcttacgatgccgaatttctttcagagct 143  Q
    || |||||||| ||||||||| |||||||| ||||||||    
T  15676526 ag-ttcacaatgttacgatgctgaatttctgtcagagct 15676563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 14606668 - 14606529
Alignment:
Q  4 caattacttcttcatcatctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaaggacaagtgtgaatgtgaacaaaatccata 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |   |||| ||||||||||| ||||| ||||||||||| |||||||||||    
T  14606668 caattgcttcttcatcatctttcaaaatcttttccaaactacctttctctacaaactcataaaccaaaaatgacaactgtgaatgtgagcaaaatccata 14606569  T
Q  104 tagcttcacaatcttacgatgccgaatttctttcagagct 143  Q
     | ||||||||| |||||||| ||||||||  ||||||||    
T  14606568 caacttcacaatattacgatgtcgaatttcggtcagagct 14606529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 16025845 - 16025706
Alignment:
Q  4 caattacttcttcatcatctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaaggacaagtgtgaatgtgaacaaaatccata 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |   |||| ||||||||||| ||||| ||||||||||| |||||||||||    
T  16025845 caattgcttcttcatcatctttcaaaatcttttccaaactacctttctctacaaactcataaaccaaaaatgacaactgtgaatgtgagcaaaatccata 16025746  T
Q  104 tagcttcacaatcttacgatgccgaatttctttcagagct 143  Q
     | ||||||||| |||||||| ||||||||  ||||||||    
T  16025745 caacttcacaatattacgatgtcgaatttcggtcagagct 16025706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 16173321 - 16173192
Alignment:
Q  4 caattacttcttcatcatctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaaggacaagtgtgaatgtgaacaaaatccata 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |   |||| ||||||||||| ||||| ||||||||||| |||||||||||    
T  16173321 caattgcttcttcatcatctttcaaaatcttttccaaactacctttctctacaaactcataaaccaaaaatgacaactgtgaatgtgagcaaaatccata 16173222  T
Q  104 tagcttcacaatcttacgatgccgaatttc 133  Q
     || |||||||| |||||||| ||||||||    
T  16173221 cagattcacaatattacgatgtcgaatttc 16173192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 16103653 - 16103524
Alignment:
Q  4 caattacttcttcatcatctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaaggacaagtgtgaatgtgaacaaaatccata 103  Q
    ||||| ||||||||||||| |||||||| || ||||||||||||||||| | | |||| ||||||||||| || || || |||||||| ||||||||||     
T  16103653 caattgcttcttcatcatccttcaaaattttctccaaactacctttctctacgaactcataaaccaaaaatgaaaactgagaatgtgagcaaaatccatg 16103554  T
Q  104 tagcttcacaatcttacgatgccgaatttc 133  Q
     | ||||||||| |||||||| | ||||||    
T  16103553 caacttcacaatattacgatgtctaatttc 16103524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 17849281 - 17849153
Alignment:
Q  15 tcatcatctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaaggacaagtgtgaatgtgaacaaaatccatatagcttcacaa 114  Q
    ||||||||||||||||| || || | ||| |||||  | | | | |||||||||||||| || ||  |||||||  ||||||||||||| ||||||||||    
T  17849281 tcatcatctttcaaaatgttatctacacttccttttcccatgaaatcgtaaaccaaaaatgagaatcgtgaatgcaaacaaaatccatacagcttcacaa 17849182  T
Q  115 tcttacgatgccgaatttctttcagagct 143  Q
    | |||||||| ||||||||| ||| ||||    
T  17849181 tgttacgatgtcgaatttctatcaaagct 17849153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 88; Significance: 1e-42; HSPs: 2)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 4916 - 5055
Alignment:
Q  4 caattacttcttcatcatctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaaggacaagtgtgaatgtgaacaaaatccata 103  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||| ||||||||||| ||||||||| |||||||    
T  4916 caattgcttcttcatcatctttcaaaatcttttccagactacctttctccatgaactcgtaaaccaaaaacgacaagtgtgagtgtgaacaatatccata 5015  T
Q  104 tagcttcacaatcttacgatgccgaatttctttcagagct 143  Q
    |||||||||||| |||| ||| ||||||||| ||| ||||    
T  5016 tagcttcacaatgttacaatgtcgaatttctgtcaaagct 5055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 13749 - 13888
Alignment:
Q  4 caattacttcttcatcatctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaaggacaagtgtgaatgtgaacaaaatccata 103  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||| ||||||||||| ||||||||| |||||||    
T  13749 caattgcttcttcatcatctttcaaaatcttttccagactacctttctccatgaactcgtaaaccaaaaacgacaagtgtgagtgtgaacaatatccata 13848  T
Q  104 tagcttcacaatcttacgatgccgaatttctttcagagct 143  Q
    |||||||||||| |||| ||| ||||||||| ||| ||||    
T  13849 tagcttcacaatgttacaatgtcgaatttctgtcaaagct 13888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 37027449 - 37027411
Alignment:
Q  86 atgtgaacaaaatccatatagcttcacaatcttacgatg 124  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  37027449 atgtgaacaaaatccatataacttcacaatgttacgatg 37027411  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 14483504 - 14483446
Alignment:
Q  15 tcatcatctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaa 73  Q
    ||||| |||||||||||||| |||| |||||| ||||| ||| |||| |||||||||||    
T  14483504 tcatcgtctttcaaaatcttatccagactacccttctccaagaactcataaaccaaaaa 14483446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 14532175 - 14532227
Alignment:
Q  86 atgtgaacaaaatccatatagcttcacaatcttacgatgccgaatttctttca 138  Q
    |||||||||||| || |||| ||||||||| || ||||| |||||||||||||    
T  14532175 atgtgaacaaaagccgtataacttcacaatattgcgatgtcgaatttctttca 14532227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 7235 - 7183
Alignment:
Q  21 tctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaa 73  Q
    |||||||||||||| |||| ||| |||||||| ||| |||| |||||||||||    
T  7235 tctttcaaaatcttgtccacactgcctttctccaagaactcataaaccaaaaa 7183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 7879 - 7827
Alignment:
Q  21 tctttcaaaatcttttccaaactacctttctcaaaggactcgtaaaccaaaaa 73  Q
    |||||||||||||| |||| ||| |||||||| ||| |||| |||||||||||    
T  7879 tctttcaaaatcttgtccacactgcctttctccaagaactcataaaccaaaaa 7827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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