View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217Eco15 (Length: 170)
Name: NF0217Eco15
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Eco15 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 1e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 2526316 - 2526160
Alignment:
| Q |
10 |
tagcagaaaccttatttgtcttttgagaagagacaatgttaatttgatccaatacaatgttgaaacaatccatgcaatccaaatcaatagcaacatcacc |
109 |
Q |
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| T |
2526316 |
tagcagaaaccttatttctcttttgagaagagacaatgttaatttgatccaatacaatgttgaaacaatccatgcaatccaaatcaatagcaatatcacc |
2526217 |
T |
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| Q |
110 |
ggcacaagttccgttaaatccacgatatgtcacatcattcacttgcacggctgaatt |
166 |
Q |
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| T |
2526216 |
ggcacaagttccgttaaatccacgatatgtcacatcattcacttgcagggctgaatt |
2526160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 32926589 - 32926461
Alignment:
| Q |
32 |
ttgagaagagacaatgttaatttgatccaatacaatgttgaaacaatccatgcaatccaaatcaatagcaacatcaccggcacaagttccgttaaatcca |
131 |
Q |
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| T |
32926589 |
ttgagaagagaaaatgtaaacttgatccaatacaacattgaaacaactcatacaatccagattaatggctaaatcaccggcatactatcctttaaaccca |
32926490 |
T |
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| Q |
132 |
cgatatgtcacatcattcacttgcacggc |
160 |
Q |
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| T |
32926489 |
cgatatgtcacataactcacttgcacggc |
32926461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 11657387 - 11657514
Alignment:
| Q |
32 |
ttgagaagagacaatgttaatttgatccaatacaatgttgaaacaatccatgcaatccaaatcaatagcaacatcaccggcacaagttccgttaaatcca |
131 |
Q |
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| T |
11657387 |
ttgagaagataaaatgtaaacttgatctaatacaatattgaaacaactcgtgcaattcagattaatagctaagtcaccaatgtaacttccattaaatcca |
11657486 |
T |
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| Q |
132 |
cgatatgtcacatcattcacttgcacgg |
159 |
Q |
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| T |
11657487 |
cgatatgtcacattagtcacttgcacgg |
11657514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 2546876 - 2546831
Alignment:
| Q |
32 |
ttgagaagagacaatgttaatttgatccaatacaatgttgaaacaa |
77 |
Q |
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| T |
2546876 |
ttgagaagagacaatgtcattttgatccaatagaatgttcaaacaa |
2546831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 52629798 - 52629712
Alignment:
| Q |
32 |
ttgagaagagacaatgttaatttgatccaatacaatgttgaaacaatccatgcaatccaaatcaatagcaacatcaccggcacaagt |
118 |
Q |
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| T |
52629798 |
ttgagaagagacaatattaatttgatccaatataatgttggaacaacccgtgcacttcatattaatagctatgtcaccggcaaaagt |
52629712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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