View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0217Eco16 (Length: 560)

Name: NF0217Eco16
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0217Eco16
NF0217Eco16
[»] chr3 (21 HSPs)
chr3 (8-339)||(26529569-26529900)
chr3 (339-518)||(37742723-37742899)
chr3 (340-515)||(44380252-44380427)
chr3 (342-509)||(33509684-33509851)
chr3 (417-512)||(50934501-50934596)
chr3 (367-513)||(47426350-47426496)
chr3 (450-520)||(32319473-32319543)
chr3 (447-515)||(10179868-10179936)
chr3 (417-513)||(47186175-47186271)
chr3 (344-515)||(35094544-35094717)
chr3 (417-513)||(31187145-31187241)
chr3 (447-515)||(10018671-10018739)
chr3 (417-513)||(42664673-42664769)
chr3 (340-515)||(17466271-17466446)
chr3 (417-513)||(34029366-34029462)
chr3 (361-511)||(39498689-39498838)
chr3 (519-557)||(26529892-26529930)
chr3 (447-515)||(10123211-10123279)
chr3 (340-394)||(19619217-19619271)
chr3 (460-512)||(21963073-21963125)
chr3 (458-498)||(25859037-25859077)
[»] chr2 (14 HSPs)
chr2 (341-515)||(34392080-34392254)
chr2 (340-515)||(7381690-7381864)
chr2 (339-499)||(23863800-23863958)
chr2 (70-224)||(43779399-43779553)
chr2 (340-515)||(37357915-37358094)
chr2 (417-515)||(21603957-21604055)
chr2 (339-490)||(4779608-4779759)
chr2 (340-518)||(4775629-4775808)
chr2 (339-403)||(21606149-21606213)
chr2 (340-492)||(25275620-25275771)
chr2 (359-508)||(14565870-14566019)
chr2 (340-482)||(41095784-41095926)
chr2 (454-513)||(37811091-37811150)
chr2 (339-375)||(919447-919483)
[»] chr5 (17 HSPs)
chr5 (341-515)||(19357261-19357434)
chr5 (340-515)||(11607532-11607707)
chr5 (340-508)||(33858536-33858704)
chr5 (339-513)||(1826259-1826433)
chr5 (379-515)||(39570080-39570216)
chr5 (417-515)||(9827786-9827884)
chr5 (340-497)||(33271630-33271787)
chr5 (417-513)||(38010689-38010785)
chr5 (417-513)||(13015381-13015477)
chr5 (417-513)||(29989962-29990058)
chr5 (63-205)||(35868428-35868569)
chr5 (446-513)||(13086753-13086820)
chr5 (417-513)||(13478120-13478216)
chr5 (71-160)||(29374536-29374625)
chr5 (364-458)||(42148201-42148295)
chr5 (417-512)||(13421085-13421180)
chr5 (340-376)||(9827903-9827939)
[»] chr4 (18 HSPs)
chr4 (340-513)||(12473704-12473877)
chr4 (340-513)||(12528113-12528286)
chr4 (346-515)||(35869575-35869744)
chr4 (340-515)||(22343335-22343510)
chr4 (365-512)||(33249397-33249544)
chr4 (342-512)||(52910050-52910219)
chr4 (340-515)||(51811912-51812087)
chr4 (357-515)||(21260792-21260950)
chr4 (340-515)||(55590480-55590644)
chr4 (417-513)||(52012778-52012874)
chr4 (427-521)||(34829168-34829262)
chr4 (417-513)||(9799438-9799534)
chr4 (71-171)||(34934150-34934250)
chr4 (454-509)||(49998486-49998541)
chr4 (340-409)||(1796654-1796723)
chr4 (417-512)||(49999663-49999758)
chr4 (339-401)||(35781021-35781083)
chr4 (472-515)||(33174516-33174560)
[»] chr1 (14 HSPs)
chr1 (340-513)||(2569037-2569209)
chr1 (342-513)||(29119324-29119495)
chr1 (344-515)||(32676134-32676305)
chr1 (339-513)||(46435462-46435624)
chr1 (364-515)||(8462127-8462277)
chr1 (417-513)||(8809715-8809811)
chr1 (420-515)||(25161307-25161402)
chr1 (441-515)||(7214510-7214584)
chr1 (340-399)||(15387156-15387215)
chr1 (124-224)||(8382284-8382384)
chr1 (464-512)||(16679821-16679868)
chr1 (454-513)||(35998252-35998311)
chr1 (341-376)||(36771533-36771568)
chr1 (110-171)||(7608541-7608602)
[»] chr6 (8 HSPs)
chr6 (339-512)||(1211841-1212014)
chr6 (340-513)||(5403874-5404047)
chr6 (340-515)||(32644836-32645009)
chr6 (448-518)||(11753162-11753232)
chr6 (417-513)||(34245567-34245663)
chr6 (339-384)||(10503256-10503301)
chr6 (420-512)||(11113557-11113649)
chr6 (358-409)||(26526385-26526436)
[»] chr7 (9 HSPs)
chr7 (340-515)||(35341534-35341709)
chr7 (340-513)||(48250154-48250329)
chr7 (340-515)||(48072387-48072560)
chr7 (340-489)||(32694568-32694717)
chr7 (420-509)||(31306951-31307041)
chr7 (358-409)||(40856949-40857000)
chr7 (454-512)||(36776062-36776120)
chr7 (417-513)||(40893116-40893213)
chr7 (449-513)||(40856392-40856456)
[»] chr8 (11 HSPs)
chr8 (339-513)||(24337827-24338001)
chr8 (75-234)||(25843013-25843172)
chr8 (68-232)||(29282562-29282727)
chr8 (340-515)||(11254026-11254200)
chr8 (346-521)||(41179567-41179742)
chr8 (340-506)||(18168392-18168559)
chr8 (340-506)||(18631949-18632116)
chr8 (363-505)||(4708328-4708470)
chr8 (417-513)||(1514803-1514899)
chr8 (75-199)||(42351691-42351815)
chr8 (461-512)||(32825954-32826005)
[»] scaffold0229 (1 HSPs)
scaffold0229 (340-512)||(13003-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (340-515)||(34192-34365)
[»] scaffold0519 (1 HSPs)
scaffold0519 (340-515)||(11193-11367)
[»] scaffold0263 (2 HSPs)
scaffold0263 (464-512)||(23094-23142)
scaffold0263 (417-512)||(23174-23263)
[»] scaffold0041 (1 HSPs)
scaffold0041 (417-513)||(73071-73168)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 26529569 - 26529900
Alignment:
Q  8 taaaatgcatattccagtactaccaacctaatcaatgatcggtttgagggagtatgtttcttatagcttgtttggatgtgcgatggcacaggttttcttg 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26529569 taaaatgcatattccagtactcccaacctaatcaatgatcggtttgagggagtatgtttcttatagcttgtttggatgtgcggtggcacaggttttcttg 26529668  T
Q  108 cgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgaccacctgccgtgattttgccttaatgtagaaatga 207  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26529669 catcccaaggcaaaaattgtcgtgatttggacaacctaacatatgtagcttcacaacaaacgtgaccacctgccgtgattttgccttaatgtagaaatga 26529768  T
Q  208 caccacatagccaaacaaacacttacaagatctcaacgatcatagtcaataaatatgtaaggacccaattttttgttatggatatttttccttcaattag 307  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  26529769 caccacatagccaaacaaacacttaaaagatctcaacgatcatagtcaataaatatgcaaggacccaattttttggtatggatatttttccttcaattag 26529868  T
Q  308 caaaaccctttactttactcatgcaagaatgg 339  Q
    ||||||| ||||||| |||||| |||||||||    
T  26529869 caaaaccatttacttcactcattcaagaatgg 26529900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 339 - 518
Target Start/End: Complemental strand, 37742899 - 37742723
Alignment:
Q  339 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 438  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||       ||||||||||||||||||||||    
T  37742899 gggatagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcattggta 37742800  T
Q  439 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 518  Q
    |||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||   ||||||||||||||||    
T  37742799 atgtaacattggtaggtggcatactctaattgaccaatgatatataccattggtaccttaa---tacacaagtggaaccc 37742723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 340 - 515
Target Start/End: Complemental strand, 44380427 - 44380252
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||       ||||||||||||||||||  |||    
T  44380427 ggataacacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataa 44380328  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     ||||||||| |||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  44380327 agtaatattgataggtgacacactataattggtcaatagtatataccattggtaccttaatggtacacaagtggaa 44380252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 342 - 509
Target Start/End: Complemental strand, 33509851 - 33509684
Alignment:
Q  342 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 441  Q
    ||||||||||||||  ||||||||||||| ||||||  ||||| |||||| || |||||||| |||||       || ||||||||||||||   ||| |    
T  33509851 atagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaag 33509752  T
Q  442 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 509  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||    
T  33509751 taatattggtaggtggcacactctaattggtcaatgatatatactattagtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 417 - 512
Target Start/End: Complemental strand, 50934596 - 50934501
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    |||||||||||| |||||  ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50934596 tatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 50934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 367 - 513
Target Start/End: Complemental strand, 47426496 - 47426350
Alignment:
Q  367 tataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactcta 466  Q
    ||||||||||  |||||| |||||  || ||||||||||||||       |||||||||||||||||   ||| |||| |||| |||||| |||||||||    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacactcta 47426397  T
Q  467 attggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  47426396 attggccaatggtatatactattggtaccttaatggtacacaagtgg 47426350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 450 - 520
Target Start/End: Original strand, 32319473 - 32319543
Alignment:
Q  450 gtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaacccca 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  32319473 gtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtagaatccca 32319543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 447 - 515
Target Start/End: Original strand, 10179868 - 10179936
Alignment:
Q  447 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtggaa 10179936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 47186271 - 47186175
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  47186271 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 47186175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 344 - 515
Target Start/End: Complemental strand, 35094717 - 35094544
Alignment:
Q  344 agcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgta 443  Q
    |||| ||||||| ||||||||||| || |||||| |||||| ||||||||||||| |||| |||||       |||||||||||||  |||  ||| |||    
T  35094717 agcatttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatatttataaagta 35094618  T
Q  444 atattggtaggtggcacactc--taattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    | |||||||||||||| ||||  ||||| | ||||||||||||||| |||||| ||||||||||  ||||||||    
T  35094617 acattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatggtactgaagtggaa 35094544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 513
Target Start/End: Original strand, 31187145 - 31187241
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| ||||||    
T  31187145 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacataagtgg 31187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 447 - 515
Target Start/End: Original strand, 10018671 - 10018739
Alignment:
Q  447 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||| ||||||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtggaa 10018739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 42664769 - 42664673
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||||||||||| ||||  |||  ||| ||||||| |||||||||||| ||||| ||||| |||||| | ||||||||||||||||||||||||||    
T  42664769 tatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttatataactttggtaccttaatggtacacaagtgg 42664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 515
Target Start/End: Complemental strand, 17466446 - 17466271
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    ||||| || ||||||| | |||||||||||||||||| ||| ||| | ||||  |||||||| |||||||       |||||||| |||| ||||  |||    
T  17466446 ggataacatttgtgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcatttataa 17466347  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     |||| |||| |||||| ||||||||||||| |||||| |||||||||||| ||  | ||| |||||||| |||||    
T  17466346 agtaacattgataggtgacacactctaattgaccaatgatatataccattgatatttgaatcgtacacaaatggaa 17466271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 513
Target Start/End: Original strand, 34029366 - 34029462
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||||||||||| ||||  ||| |||| ||| ||| |||||||||||| ||||  ||||| |||||| ||||||||||||||||||| ||||||||    
T  34029366 tatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggtaccttaatggtaaacaagtgg 34029462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 511
Target Start/End: Original strand, 39498689 - 39498838
Alignment:
Q  361 atggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcac 460  Q
    ||||||||||| |||| ||||||| |||||||||||||||||| |||||       ||||| |||||||  |||  |||  ||| || | |||||| |||    
T  39498689 atggtatatactattgctcaattagaatgtgtcacgtggcacatccttt-aaaaattatattaaataaaatatttataaaataacatcgataggtgacac 39498787  T
Q  461 actctaattggccaatggtatataccattggtaccttaatggtacacaagt 511  Q
    ||| |||||| |||||  |||||| ||||||||| ||||||||||||||||    
T  39498788 actttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 519 - 557
Target Start/End: Original strand, 26529892 - 26529930
Alignment:
Q  519 caagaatggatcacgtacacctatgatttgcaccaattg 557  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26529892 caagaatggatcacgtacacctatgatttgcaccaattg 26529930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 515
Target Start/End: Original strand, 10123211 - 10123279
Alignment:
Q  447 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    ||||||||||||||||| | |||| ||| || |||||| ||||| ||| ||||||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtggaa 10123279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 19619271 - 19619217
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtca 394  Q
    ||||||||| |||||| ||||||||||||||||||||  |||||| |||||||||    
T  19619271 ggatagcacatgtgtaccataatggtatataccattgcccaattaaaatgtgtca 19619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 512
Target Start/End: Original strand, 21963073 - 21963125
Alignment:
Q  460 cactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    |||||| ||||| ||||| |||||| ||||| ||||||||||||||| |||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtg 21963125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 25859037 - 25859077
Alignment:
Q  458 cacactctaattggccaatggtatataccattggtacctta 498  Q
    |||||||||||||||||||| |||||| |||||||| ||||    
T  25859037 cacactctaattggccaatgttatataacattggtagctta 25859077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 4e-55; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 341 - 515
Target Start/End: Original strand, 34392080 - 34392254
Alignment:
Q  341 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 440  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| | |||| || ||||||||||||||       ||||||||||||||||||  |||     
T  34392080 gatagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaa 34392179  T
Q  441 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34392180 gtaagattggtaggtggcacactctaattggccaatggtatataccattggtacctcaatggtacacaagtggaa 34392254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 340 - 515
Target Start/End: Complemental strand, 7381864 - 7381690
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||| ||||| |||  |||||||||||||| ||||  |||||| |||||||||| || |||| |||||       |||||||||||||| |||  |||    
T  7381864 ggatagaacttgcgtactataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaatttataa 7381766  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7381765 agtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaagcggaa 7381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 339 - 499
Target Start/End: Original strand, 23863800 - 23863958
Alignment:
Q  339 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 438  Q
    ||||||||||| ||||| ||||||| |||||| |||||| |||||| |||||| || ||||||||||||||       ||||||||||||||||||  ||    
T  23863800 gggatagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttata 23863899  T
Q  439 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaa 499  Q
    | |||| ||||||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  23863900 aagtaacattggtaggtggcacactctaattgaccaat--aatataccattggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 70 - 224
Target Start/End: Original strand, 43779399 - 43779553
Alignment:
Q  70 atagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacg 169  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |  |||  ||||||||||||||  ||||||    
T  43779399 atagcttgtttggatgtgcgatggaacaagttttcttgcgtcccaaggcaaaaattgtcgtgatttggaaaggctactatatgtagcttcactgcaaacg 43779498  T
Q  170 tgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaaca 224  Q
    |||   |||||||||||||||  || |||| |||||| |||  || |||||||||    
T  43779499 tgagttcctgccgtgattttggtttgatgtggaaatggcactgcacagccaaaca 43779553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 340 - 515
Target Start/End: Original strand, 37357915 - 37358094
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnnta----tatcaaataaagcattg 435  Q
    |||||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||   |||        |    ||| ||||||||||||     
T  37357915 ggatagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcacatagtttaaaaaaaaaaaaatattaaataaagcattt 37358014  T
Q  436 gtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     ||| |||| |||| |||||| |||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||    
T  37358015 ataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtggaa 37358094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 417 - 515
Target Start/End: Complemental strand, 21604055 - 21603957
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    ||||||||||||| ||||  ||| |||| |||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtggaa 21603957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 339 - 490
Target Start/End: Complemental strand, 4779759 - 4779608
Alignment:
Q  339 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 438  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||| |||||       |||||||||||||| |||  ||    
T  4779759 gggataacacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttata 4779660  T
Q  439 atgtaatattggtaggtggcacactctaattggccaatggtatataccattg 490  Q
    | |||| |||| |||| |||||||| ||| ||  ||||||||||||| ||||    
T  4779659 aagtaacattgttaggcggcacactataagtgatcaatggtatatactattg 4779608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 340 - 518
Target Start/End: Complemental strand, 4775808 - 4775629
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagca-ttggta 438  Q
    ||||| || ||||||| ||||||||||||||||||||| |||||| | |||| || |||||||| |||||       ||||| ||||||| || ||  ||    
T  4775808 ggataacatttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaata 4775709  T
Q  439 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 518  Q
    | |||| |||||||| ||  ||| ||||||||||||||  |||||| |||||||| |||||||||||| |||||| ||||    
T  4775708 aagtaagattggtagatgagacattctaattggccaataatatatatcattggtagcttaatggtacataagtggtaccc 4775629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 21606213 - 21606149
Alignment:
Q  339 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcaca 403  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  21606213 gggatagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 340 - 492
Target Start/End: Original strand, 25275620 - 25275771
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    ||||||||||| |||| |||||||||||||| |||||| |||||| ||||| |||||||||||| |||||       |||||||||||||| |||   ||    
T  25275620 ggatagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatcctttaaaaaagtatatcaaataaagtatt-taaa 25275718  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggt 492  Q
     |||| |||| ||||||||||||  ||||||  |||| ||||| || ||||||    
T  25275719 agtaacattgataggtggcacacaataattgatcaatcgtataaactattggt 25275771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 508
Target Start/End: Original strand, 14565870 - 14566019
Alignment:
Q  359 taatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggc 458  Q
    ||||| ||||||| |||| ||| ||| ||||||| || ||||||| |||||       |||||||||| ||| | |  |||  ||||||||||| || ||    
T  14565870 taatgttatatacaattggtcagttaaaatgtgttacatggcacatcctttaaaaaactatatcaaatgaagtacttataaaataatattggtatgtagc 14565969  T
Q  459 acactctaattggccaatggtatataccattggtaccttaatggtacaca 508  Q
    |||||||| |||  ||||| |||||| ||||||||||||| |||||||||    
T  14565970 acactctacttgatcaatgatatataacattggtaccttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 482
Target Start/End: Original strand, 41095784 - 41095926
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||||||  ||| ||||||||||||||||||||  || |||   |||| || |||||| ||| |||       | ||||||||||||||||  |||    
T  41095784 ggatagcacttaggtaccataatggtatataccattggccatttagggtgtgccatgtggcataccttttaaaaaaatctatcaaataaagcatttataa 41095883  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtata 482  Q
     |||| ||||||||||||  ||||||||||| ||||| |||||    
T  41095884 agtaacattggtaggtggtgcactctaattgaccaattgtata 41095926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 513
Target Start/End: Complemental strand, 37811150 - 37811091
Alignment:
Q  454 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    |||||||||| | ||||||||||| |||||| |||||||| |  ||||||||||||||||    
T  37811150 gtggcacactttcattggccaatgttatataacattggtatcccaatggtacacaagtgg 37811091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 919447 - 919483
Alignment:
Q  339 gggatagcacttgtgtaacataatggtatataccatt 375  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  919447 gggatagcacttgtgtaccataatggtttataccatt 919483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 341 - 515
Target Start/End: Original strand, 19357261 - 19357434
Alignment:
Q  341 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 440  Q
    ||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||| ||| |||||       ||||||||||||||||||  |||     
T  19357261 gatagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcatttataaa 19357359  T
Q  441 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19357360 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtggaa 19357434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 340 - 515
Target Start/End: Original strand, 11607532 - 11607707
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||| |||||| | |||||||||||||||       ||||||||||||| ||||  |||    
T  11607532 ggatagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 11607631  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  11607632 agtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtggaa 11607707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 340 - 508
Target Start/End: Original strand, 33858536 - 33858704
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  33858536 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 33858635  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacaca 508  Q
     |||| |||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||    
T  33858636 agtaacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 339 - 513
Target Start/End: Complemental strand, 1826433 - 1826259
Alignment:
Q  339 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 438  Q
    |||||| |||||||||| ||||||| |||||| ||||||||||||| |||||| || ||||||||  ||||       |||||||||||||||||    |    
T  1826433 gggatatcacttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctaca 1826334  T
Q  439 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  1826333 aagtaatattggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 1826259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 379 - 515
Target Start/End: Original strand, 39570080 - 39570216
Alignment:
Q  379 caattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatgg 478  Q
    |||||| ||| ||||| ||||||||||||||       ||||||||||||| ||||  ||| |||| ||||||||||| |||||||||||||||||||||    
T  39570080 caattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgg 39570179  T
Q  479 tatataccattggtaccttaatggtacacaagtggaa 515  Q
    |||||||||||| ||| |||||| |||||||||||||    
T  39570180 tatataccattgatactttaatgatacacaagtggaa 39570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 417 - 515
Target Start/End: Complemental strand, 9827884 - 9827786
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    |||||||||||||  |||  ||| ||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||||||    
T  9827884 tatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtacacaagtggaa 9827786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 340 - 497
Target Start/End: Complemental strand, 33271787 - 33271630
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    ||||||||||| |||| ||||||||||||||| ||||  |||||| |||||| |||||||| || |||||       ||||||||||||||||||  | |    
T  33271787 ggatagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatca 33271688  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtacctt 497  Q
     |||| |||| ||| || |||||||||||||||||||| |||||| ||||||||||||    
T  33271687 agtaacattgatagatgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 417 - 513
Target Start/End: Original strand, 38010689 - 38010785
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  38010689 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 38010785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 13015477 - 13015381
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    |||||||||||||  |||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  13015477 tatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13015381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 29990058 - 29989962
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||| ||||||||||||||||||||||    
T  29990058 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgataccttaatggtacacaagtgg 29989962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 35868569 - 35868428
Alignment:
Q  63 gtttcttatagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacg 162  Q
    |||||| |||||||||||||||||||| ||| |   | ||||| |||||||||||||||||||||||||||||||| || |||  |||||||||||||      
T  35868569 gtttctaatagcttgtttggatgtgcggtggaagcagctttctcgcgtcccaaggcaaaaattgccgtgatttggaaaagctattatatgtagcttcagt 35868470  T
Q  163 acaaacgtgaccacctgccgtgattttgccttaatgtagaaat 205  Q
      |||||||    ||||||||||||||||||| |||| |||||    
T  35868469 gtaaacgtg-gttcctgccgtgattttgccttgatgtggaaat 35868428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 446 - 513
Target Start/End: Complemental strand, 13086820 - 13086753
Alignment:
Q  446 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  13086820 attggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13086753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 513
Target Start/End: Original strand, 13478120 - 13478216
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    |||||||||||||  |||  ||| |||| | ||||| |||||||||||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  13478120 tatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattggttccttaatggtacacaagtgg 13478216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 29374536 - 29374625
Alignment:
Q  71 tagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttca 160  Q
    ||||||||||||||||||| ||| |   | ||||| || ||||||||||||||||||||||||||||| || |||  ||||||| |||||    
T  29374536 tagcttgtttggatgtgcggtggaagcagctttctcgcatcccaaggcaaaaattgccgtgatttggaaaagctactatatgtaacttca 29374625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 458
Target Start/End: Complemental strand, 42148295 - 42148201
Alignment:
Q  364 gtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggc 458  Q
    ||||||||||||||||||||| ||||||  |||||| |||||||||       ||||||||||||| ||||  ||| |||| |||||||||||||    
T  42148295 gtatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 512
Target Start/End: Original strand, 13421085 - 13421180
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    ||||| ||||||||||||  ||| |||| |||| ||  ||  ||||||| ||||  ||||| |||||| ||||| |||||||||||||||||||||    
T  13421085 tatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttatataacattgataccttaatggtacacaagtg 13421180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 9827939 - 9827903
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattg 376  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9827939 ggataacacttgtgtaccataatggtatataccattg 9827903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 340 - 513
Target Start/End: Complemental strand, 12473877 - 12473704
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||       |||||||||||||||||   |||    
T  12473877 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12473778  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12473777 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12473704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 340 - 513
Target Start/End: Complemental strand, 12528286 - 12528113
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||       |||||||||||||||||   |||    
T  12528286 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12528187  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12528186 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12528113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 346 - 515
Target Start/End: Original strand, 35869575 - 35869744
Alignment:
Q  346 cacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaat 445  Q
    ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||| ||||  ||  ||||     
T  35869575 cacttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaac 35869674  T
Q  446 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35869675 attggtaggtggcacattataattggtcaatggtatataccattggtaccttaatggtacacaagtggaa 35869744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 340 - 515
Target Start/End: Complemental strand, 22343510 - 22343335
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    ||||| ||| |||||| |||||||||||||| ||||||||||||| ||||||||| |||||||| |||||       ||||||||||||||||||  |||    
T  22343510 ggatatcacctgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataa 22343411  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     |||| |||| ||| || |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  22343410 agtaacattgatagatgacacactctaattggtcaatgatatataccattgataccttaatggtacacaagtggaa 22343335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 365 - 512
Target Start/End: Original strand, 33249397 - 33249544
Alignment:
Q  365 tatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactc 464  Q
    |||||| ||||| ||||||| | |||| || ||||||||||||||       ||||||||||||||||||  ||| |||| ||||||||||| |||||||    
T  33249397 tatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacacactc 33249496  T
Q  465 taattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  33249497 taattggccaattgtatataccatttgtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 342 - 512
Target Start/End: Original strand, 52910050 - 52910219
Alignment:
Q  342 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 441  Q
    ||||||||| |||| ||| |||||||||||||||| |||||||   |||| ||||||||| ||| |||       | ||||||||||||||||  ||| |    
T  52910050 atagcacttatgtaccattatggtatataccattgatcaattagggtgtgccacgtggcataccttttaatttttt-tatcaaataaagcatttataaag 52910148  T
Q  442 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||    
T  52910149 taatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 340 - 515
Target Start/End: Complemental strand, 51812087 - 51811912
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    ||||| ||||||| || ||||||||||||||||||| | |||||| |||||||||| |||||||||||||       ||||||||| |||  |||  |||    
T  51812087 ggataacacttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataa 51811988  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     |||| |||||||||||||| ||||||||||||||||  |||||| | ||| |||||||||||||||| |||||||    
T  51811987 agtaacattggtaggtggcatactctaattggccaataatatatatctttgataccttaatggtacacgagtggaa 51811912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 357 - 515
Target Start/End: Complemental strand, 21260950 - 21260792
Alignment:
Q  357 cataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtg 456  Q
    |||||||||||||| ||||   |||||| |||||| || ||||||||||||||       ||||||||||||| ||||  ||| |||| |||||||||||    
T  21260950 cataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtg 21260851  T
Q  457 gcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     |||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||    
T  21260850 acacactctaattggccaatgatatatatcattggtaccttaatggtatataagtggaa 21260792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 340 - 515
Target Start/End: Complemental strand, 55590644 - 55590480
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||||||| ||| ||||||||||||| ||||||  |||||| |||||||||||||||||| |||||       ||||||||||||||             
T  55590644 ggatagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaag--------- 55590554  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
      ||| ||||||||||| |||||| ||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  55590553 --taacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtggaa 55590480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 52012874 - 52012778
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||| | ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  52012874 tatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 52012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 521
Target Start/End: Original strand, 34829168 - 34829262
Alignment:
Q  427 aaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccccaa 521  Q
    ||||||||  ||| |||| ||||||||||| |||||| |||||||||| || |||||| ||||||||||||||| ||||| ||||| || |||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtgaaatcccaa 34829262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 513
Target Start/End: Original strand, 9799438 - 9799534
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||| ||||||| ||||  ||| |||| ||||||| |||||||| |||  |||| ||||| |||||| ||||||||||||||||||| ||||||||    
T  9799438 tatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattggtaccttaatggtatacaagtgg 9799534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 34934250 - 34934150
Alignment:
Q  71 tagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgt 170  Q
    ||||||||||||||||||| ||| | | ||||||| ||||||||| ||||||||||| || ||||||| || |||  |||||||| |||||  |||||||    
T  34934250 tagcttgtttggatgtgcggtggaataagttttctcgcgtcccaaagcaaaaattgcagttatttggaaaagctactatatgtagtttcactgcaaacgt 34934151  T
Q  171 g 171  Q
    |    
T  34934150 g 34934150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 509
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  454 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 509  Q
    ||||||||| |||||||||||||| ||||||  |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 1796723 - 1796654
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 409  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| | |||| |||||| |||| |||||    
T  1796723 ggataacacttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatccttt 1796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 512
Target Start/End: Original strand, 49999663 - 49999758
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    ||||||||||||||||||  |||  ||| ||||||| ||| ||||||||||||| ||||||  | ||| |||| ||| ||| ||||||||||||||    
T  49999663 tatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 401
Target Start/End: Complemental strand, 35781083 - 35781021
Alignment:
Q  339 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggca 401  Q
    |||||| |||||| ||| ||||||||||||||||||||  |||||| |||||| |||||||||    
T  35781083 gggatatcacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 515
Target Start/End: Complemental strand, 33174560 - 33174516
Alignment:
Q  472 ccaatggtatataccattggta-ccttaatggtacacaagtggaa 515  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  33174560 ccaatggtatatactcttggtaaccttaatggtacacaagtggaa 33174516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 340 - 513
Target Start/End: Complemental strand, 2569209 - 2569037
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||||||||||||||||||| ||||||| ||||   ||||| |||||| ||| |||||||||||||       |||||||||||||||||||||||    
T  2569209 ggatagcacttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaa 2569111  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  2569110 tgtaacattggtaggtggcacactctaattggcaaatgatatataccattggtaccttaatggtacacaagtgg 2569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 342 - 513
Target Start/End: Original strand, 29119324 - 29119495
Alignment:
Q  342 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 441  Q
    |||||| ||||||| ||||| ||||||||| ||||  |||||| |||||| || ||||||||||||||       |||||||||||||||||   ||| |    
T  29119324 atagcatttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaag 29119423  T
Q  442 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29119424 taacaatgataggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 29119495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 344 - 515
Target Start/End: Complemental strand, 32676305 - 32676134
Alignment:
Q  344 agcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgta 443  Q
    |||| |||||||  |||||||||||||||||||| |||||| | |||| || ||||||||  ||||       ||||||||||||||||||  ||| |||    
T  32676305 agcatttgtgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagta 32676206  T
Q  444 atattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    | ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32676205 acattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 32676134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 339 - 513
Target Start/End: Original strand, 46435462 - 46435624
Alignment:
Q  339 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 438  Q
    ||||||| ||||||||| ||||||||||||||||||||  |||||| ||||||||| ||| ||||||||||       |||||||||||||||||   ||    
T  46435462 gggataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcatctata 46435561  T
Q  439 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    |            ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46435562 a------------aggtgacgcactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 46435624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 364 - 515
Target Start/End: Complemental strand, 8462277 - 8462127
Alignment:
Q  364 gtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacact 463  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||||       ||||| ||||||| ||||  |||  ||| ||||||||||||||||||    
T  8462277 gtatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacatttataaaataacattggtaggtggcacact 8462178  T
Q  464 ctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     ||||||  ||||| |||||||||||||||| |||||  |||||||||||||    
T  8462177 ataattgatcaatgatatataccattggtactttaat-atacacaagtggaa 8462127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 417 - 513
Target Start/End: Original strand, 8809715 - 8809811
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  8809715 tatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 8809811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 420 - 515
Target Start/End: Complemental strand, 25161402 - 25161307
Alignment:
Q  420 atcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    |||||||||| ||||  ||| |||| |||| ||||||||||||| ||||||| ||||||||||||||||||  || ||||||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtggaa 25161307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 515
Target Start/End: Original strand, 7214510 - 7214584
Alignment:
Q  441 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
    ||||||| | |||||| ||||||||||||| |||||  ||||||| ||| ||||||||||||||||||| |||||    
T  7214510 gtaatatcgataggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaaatggaa 7214584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 15387156 - 15387215
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtgg 399  Q
    ||||| ||||| |||| ||||||||||||||  |||||||||||| ||||||||||||||    
T  15387156 ggataacacttatgtaccataatggtatataatattgttcaattaaaatgtgtcacgtgg 15387215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 8382284 - 8382384
Alignment:
Q  124 ttgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaac 223  Q
    ||||||||||| ||| || |||  ||| ||||||||||  |||||||||   ||||||||||||||| ||| |||| |||||| |||| || ||||||||    
T  8382284 ttgccgtgattcggaaaagctactatacgtagcttcactgcaaacgtgagttcctgccgtgattttggcttgatgtggaaatggcaccgcacagccaaac 8382383  T
Q  224 a 224  Q
    |    
T  8382384 a 8382384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 512
Target Start/End: Original strand, 16679821 - 16679868
Alignment:
Q  464 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  16679821 ctaattggc-aatagtatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 513
Target Start/End: Complemental strand, 35998311 - 35998252
Alignment:
Q  454 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    |||||||||||| |||   ||||| |||||| ||||||||||||||||||| ||||||||    
T  35998311 gtggcacactcttattaatcaatgttatataacattggtaccttaatggtatacaagtgg 35998252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 376
Target Start/End: Complemental strand, 36771568 - 36771533
Alignment:
Q  341 gatagcacttgtgtaacataatggtatataccattg 376  Q
    |||||||||||||||| |||||||||||||||||||    
T  36771568 gatagcacttgtgtaatataatggtatataccattg 36771533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 7608541 - 7608602
Alignment:
Q  110 tcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtg 171  Q
    |||||||||||||||||  |||||||||| || |||  ||||||||||||||  ||||||||    
T  7608541 tcccaaggcaaaaattgatgtgatttggaaaagctactatatgtagcttcacagcaaacgtg 7608602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 339 - 512
Target Start/End: Original strand, 1211841 - 1212014
Alignment:
Q  339 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 438  Q
    |||||| |||||||||| ||||||||||||||||||||  | |||| |||||| |||||||||||||||||       ||||||||||||||||| | ||    
T  1211841 gggatatcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgata 1211940  T
Q  439 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    | |||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1211941 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 1212014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 340 - 513
Target Start/End: Original strand, 5403874 - 5404047
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||  || ||||||       ||||||||||||| |||   |||    
T  5403874 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataa 5403973  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
     |||| |||||||||||||| ||||||| || |||||  ||||||||||| |||||||||||||||||||||||    
T  5403974 agtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggtacacaagtgg 5404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 340 - 515
Target Start/End: Original strand, 32644836 - 32645009
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | ||| ||| ||||||||||||||       |||| ||||||||| |||  |||    
T  32644836 ggatagcacttgtgta-cataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtatt-ttaa 32644933  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     |||| ||| ||||||| |||||  ||||||||||||| ||||||| || | || |||||||||||||| ||||||    
T  32644934 agtaacatttgtaggtgacacaccttaattggccaatgatatatactatcgatatcttaatggtacacaggtggaa 32645009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 448 - 518
Target Start/End: Complemental strand, 11753232 - 11753162
Alignment:
Q  448 tggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 518  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtggtaccc 11753162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 34245663 - 34245567
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||| | ||||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  34245663 tatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgttatataacattaataccttaatggtacacaagtgg 34245567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 10503256 - 10503301
Alignment:
Q  339 gggatagcacttgtgtaacataatggtatataccattgttcaatta 384  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  10503256 gggatagcacttgtgtaccataatggtatataccattgtccaatta 10503301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 512
Target Start/End: Complemental strand, 11113649 - 11113557
Alignment:
Q  420 atcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    ||||||||||||| |   || |||| ||| ||| ||| |||||||| ||| | ||||| |||||| |||||||||||||||||||||||||||    
T  11113649 atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 26526385 - 26526436
Alignment:
Q  358 ataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 409  Q
    |||||||||| ||| |||||||||||| ||||||||||||| ||||||||||    
T  26526385 ataatggtatctactattgttcaattagaatgtgtcacgtgacacacccttt 26526436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 340 - 515
Target Start/End: Complemental strand, 35341709 - 35341534
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    ||||| ||||| | || ||||||| |||||| |||||| |||||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  35341709 ggataacacttatctaccataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 35341610  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     |||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  35341609 agtaacattggtaggtggcacactataattggtcaatggtatatatcattggtaccttaatggtacacaagtggaa 35341534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 340 - 513
Target Start/End: Complemental strand, 48250329 - 48250154
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtg--gcacaccctttnnnnnnntatatcaaataaagcattggt 437  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||| ||  ||| |||||||        ||||||||||||||||   |    
T  48250329 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatctat 48250230  T
Q  438 aatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    || |||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  48250229 aaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacacaagtgg 48250154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 340 - 515
Target Start/End: Complemental strand, 48072560 - 48072387
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| |||||| |||||||||||||||||       || ||||||||||  |||  |||    
T  48072560 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttataa 48072461  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
      ||| ||||  | |||||||||||||||||  ||||||  ||||| |||||||||||||| ||||||||||||||    
T  48072460 aataacattgaaatgtggcacactctaattgatcaatgg--tatactattggtaccttaatagtacacaagtggaa 48072387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 340 - 489
Target Start/End: Original strand, 32694568 - 32694717
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    ||||||||||||||||  |||||||||||||||||||   ||||| ||||||||||||||||||||||||       |||||||||||||| |||  |||    
T  32694568 ggatagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataa 32694667  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccatt 489  Q
     |||| |||| ||| ||| |||||||||||  ||||||||||||| ||||    
T  32694668 agtaacattgatagatgggacactctaatttaccaatggtatatatcatt 32694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 509
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  420 atcaaataaagcattggtaatgtaatattggtaggtggcacactct-aattggccaatggtatataccattggtaccttaatggtacacaa 509  Q
    |||||||||||||||  ||| |||| |||||||||| ||||||| | |||||| ||||| |||||| ||||| ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  358 ataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 409  Q
    ||||||||||||| |||||| |||||| ||||||||| ||||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 36776062 - 36776120
Alignment:
Q  454 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    ||||||||||||||||  |||||| |||||| ||  |||||||||||||||| ||||||    
T  36776062 gtggcacactctaattcaccaatgttatataacagcggtaccttaatggtacgcaagtg 36776120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 513
Target Start/End: Original strand, 40893116 - 40893213
Alignment:
Q  417 tatatcaaataaa-gcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||||||||||| |||||  ||| |||| |||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| ||||||||    
T  40893116 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtgg 40893213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 40856456 - 40856392
Alignment:
Q  449 ggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    |||||||| |||||||||||||  ||||  |||||| |||| ||||||||||| |||| ||||||    
T  40856456 ggtaggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtgg 40856392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 339 - 513
Target Start/End: Original strand, 24337827 - 24338001
Alignment:
Q  339 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 438  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||  | ||||||||||||||       |||||||||||||||||   ||    
T  24337827 gggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctata 24337926  T
Q  439 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    | |||| |||||||| |||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||    
T  24337927 aagtaacattggtagatggcacactctaattgaccgatggtatataccattgctaccttaatagtacacaagtgg 24338001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 25843172 - 25843013
Alignment:
Q  75 ttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgacc 174  Q
    ||||||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||| |  ||| ||| ||||||||||| ||||||||||||    
T  25843172 ttgtttggatgagcggtgccacaggttttcttgcatcccaaggcaaaaattgccgtgatttggaaacgctaccatgtgtagcttcactacaaacgtgacc 25843073  T
Q  175 acctgccgtgattttgccttaatgtagaaatgacaccacatagccaaacaaacacttaca 234  Q
    |||||| |||||||||  || |||| ||||| |||||||| |||||||||| ||||||||    
T  25843072 acctgctgtgattttggtttgatgtggaaattacaccacacagccaaacaagcacttaca 25843013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 29282727 - 29282562
Alignment:
Q  68 ttatagcttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaa---ttgccgtgatttggacaacctaacatatgtagcttcacgac 164  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||   ||  ||||||||||| || | | ||||||||||||||| ||    
T  29282727 ttatagcttgtttggatgtgcgatggtacaggttttctcgcgtcccaaggcaaaaaaaatt--cgtgatttggaaaagcaaccatatgtagcttcactac 29282630  T
Q  165 aaacgtgaccacctgccgtgattttgccttaatgtagaaatgacaccacatagccaaacaaacactta 232  Q
    ||| | |||||||||| |||||||||  || |||| |||||||||||||| |||||||||| ||||||    
T  29282629 aaatgcgaccacctgcagtgattttggtttgatgtggaaatgacaccacacagccaaacaagcactta 29282562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 340 - 515
Target Start/End: Original strand, 11254026 - 11254200
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  11254026 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11254125  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     |||| |||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||    
T  11254126 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaa 11254200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 346 - 521
Target Start/End: Original strand, 41179567 - 41179742
Alignment:
Q  346 cacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaat 445  Q
    |||||||||| ||||||||||||||||||||  |||||| |||||| || |||||||| || ||       ||||| ||||||| ||||  ||| ||||     
T  41179567 cacttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaac 41179666  T
Q  446 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccccaa 521  Q
    || |||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  41179667 atcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaatggtacacaagtggaatcccaa 41179742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 506
Target Start/End: Complemental strand, 18168559 - 18168392
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 438  Q
    ||||||||  |||||| ||||||||||||||  |||    ||||| | |||||||||||||||| |||||        |||||||||||||| |||  ||    
T  18168559 ggatagcatctgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttata 18168460  T
Q  439 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 506  Q
    | |||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18168459 aagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 506
Target Start/End: Complemental strand, 18632116 - 18631949
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 438  Q
    ||||||||  |||||| ||||||||||||||  |||    ||||| | |||||||||||||||| |||||        |||||||||||||| |||  ||    
T  18632116 ggatagcatctgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttata 18632017  T
Q  439 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 506  Q
    | |||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18632016 aagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 505
Target Start/End: Original strand, 4708328 - 4708470
Alignment:
Q  363 ggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacac 462  Q
    |||| |||||||||   ||||| |||||| |||||||||||||||||       ||||||||||||| ||||  ||| |||| ||||||||||| |||||    
T  4708328 ggtaaataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtaggtgacacac 4708427  T
Q  463 tctaattggccaatggtatataccattggtaccttaatggtac 505  Q
    | ||||||||  ||| ||||| |||||||||||||| ||||||    
T  4708428 tttaattggcgcatgatatatgccattggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 1514899 - 1514803
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||| ||||||| ||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  1514899 tatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaatggtacacaagtgg 1514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 42351691 - 42351815
Alignment:
Q  75 ttgtttggatgtgcgatggcacaggttttcttgcgtcccaaggcaaaaattgccgtgatttggacaacctaacatatgtagcttcacgacaaacgtgacc 174  Q
    |||||||||||||   ||| ||| ||||||| |||||| || |||||||||||||||||||| | || | |  ||||||||||||||  |||||||||      
T  42351691 ttgtttggatgtgtcgtggaacaagttttctcgcgtcctaaagcaaaaattgccgtgatttgaaaaagcaactatatgtagcttcactgcaaacgtgaat 42351790  T
Q  175 acctgccgtgattttgccttaatgt 199  Q
     ||||||||||||||| ||| ||||    
T  42351791 tcctgccgtgattttggcttgatgt 42351815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 512
Target Start/End: Original strand, 32825954 - 32826005
Alignment:
Q  461 actctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    |||||||||||||||||||||| | ||||| ||| |||||||||||||||||    
T  32825954 actctaattggccaatggtatacaacattgatactttaatggtacacaagtg 32826005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 340 - 512
Target Start/End: Original strand, 13003 - 13176
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcaca-ccctttnnnnnnntatatcaaataaagcattggta 438  Q
    |||||||||||||||| ||||||||||||||||||||  | |||| |||||| ||||||||||| ||||||       ||||||||||||||||| | ||    
T  13003 ggatagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatcgata 13102  T
Q  439 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    | |||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13103 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 340 - 515
Target Start/End: Complemental strand, 34365 - 34192
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||| ||||||| ||||| |||||||| |||| | |||||| ||||||||||||| ||||||||||       |||||||||||||  |||  |||    
T  34365 ggatagcatttgtgtaccataa-ggtatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatatttataa 34268  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     |||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34267 agtaatattggtaagtggcacactctaattggccaataatatataccattggtaccttaatggtacacaagtggaa 34192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 340 - 515
Target Start/End: Complemental strand, 11367 - 11193
Alignment:
Q  340 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 439  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  11367 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11268  T
Q  440 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 515  Q
     |||| |||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||    
T  11267 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaa 11193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 23142 - 23094
Alignment:
Q  464 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  23142 ctaattggccaatagtatataccattggtaccttaatgatacacaagtg 23094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 512
Target Start/End: Original strand, 23174 - 23263
Alignment:
Q  417 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 512  Q
    |||||||||||||  |||  ||| |||| |||||||||||||||||||||||||||||||| ||||      | ||||||||||||||||||||||    
T  23174 tatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaagtg 23263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 73168 - 73071
Alignment:
Q  417 tatatcaaataaa-gcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 513  Q
    ||||||||||||| |||||  ||| |||| |||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| ||||||||    
T  73168 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtgg 73071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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