View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0217Eco18 (Length: 774)

Name: NF0217Eco18
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0217Eco18
NF0217Eco18
[»] chr6 (2 HSPs)
chr6 (3-767)||(32831132-32831898)
chr6 (56-103)||(23107715-23107762)
[»] chr7 (5 HSPs)
chr7 (54-208)||(37519126-37519280)
chr7 (50-208)||(3100634-3100792)
chr7 (55-161)||(21562687-21562793)
chr7 (50-103)||(22244665-22244718)
chr7 (60-122)||(34868066-34868128)
[»] chr5 (1 HSPs)
chr5 (57-120)||(43177076-43177139)
[»] scaffold0024 (1 HSPs)
scaffold0024 (50-105)||(121024-121078)
[»] chr2 (1 HSPs)
chr2 (55-161)||(31275066-31275172)
[»] chr3 (3 HSPs)
chr3 (55-208)||(940434-940586)
chr3 (54-103)||(14753751-14753800)
chr3 (56-103)||(41301818-41301865)
[»] chr1 (2 HSPs)
chr1 (55-163)||(20805807-20805915)
chr1 (57-103)||(18507623-18507669)
[»] chr8 (2 HSPs)
chr8 (58-103)||(28235978-28236023)
chr8 (50-103)||(10649227-10649280)
[»] chr4 (2 HSPs)
chr4 (55-103)||(9157352-9157400)
chr4 (55-103)||(31816352-31816400)


Alignment Details
Target: chr6 (Bit Score: 650; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 3 - 767
Target Start/End: Original strand, 32831132 - 32831898
Alignment:
Q  3 ccaattatgcctaagtttcggaccacaaagcagctccagttcctttgttttatgggcttgtatttccgtgacttaggccccaagcaacttgggccctaag 102  Q
    |||||| |||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32831132 ccaattgtgcctaagtttcg---cacaaagcagctgcagttcctttgttttatgggcttgtatttccgtgacttaggccccaagcaacttgggccctaag 32831228  T
Q  103 ttacgcttagagtgttctaggcacttttggaatccttctgaggcggcccccttaggaggatacgccaaaggtcgtttgggcccttttggagagcgttgtg 202  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32831229 ttacgtttagagtgttctaggcacttctggaatccttctgaggcggcccccttaggaggatacgcccaaggtcgtttgggcccttttggagagcgttgtg 32831328  T
Q  203 cccttagtacaacttgtatataaataaatactacggttcaatggttcacagcaggaagaaatctgaaccaaacttaattgttagaacagttcggtaaaat 302  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32831329 cccttggtacaacttgtatataaataaatactacggttcaatggttcactgcaggaagaaatctgaaccaaacttaattgttagaacagttcggtaaaat 32831428  T
Q  303 caaaccgaactgttaatggtttgtccgaaccaaaccagcataaaggtttggcgcaccggttctatacttccactccaaaactaccttttcaaaaaccta- 401  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     
T  32831429 caaaccgaactgttaatggtttgtccgaaccaaactagcataaaggtttggcgcaccggttctatacttccactccaaaactaccttttcaaaaaattaa 32831528  T
Q  402 ---aactatac-ctatttgaatcgaacttattctttgtgaaccgatttgaaattaataactgatattaggactattnnnnnnncctaaaatcgatcaaac 497  Q
       |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||    
T  32831529 actaactatactctatttgaatcgaacttattctttgtgaaccgatttgcaattaataactgatattaggactattaaaaaaacctaaaatcgatcaaac 32831628  T
Q  498 taatatcaagagggtttaagaaaccaaaaaactgaactgcgccgctaaggcgctaaccaaactgaaccacacgaaaatacctgaattatgacagataatt 597  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32831629 taatatcaagagggtttaagaaaccaaaaaactgaactgagccgctaaggcgctaaccaaactgaaccacacgaaaatacctgaattatgaaagataatt 32831728  T
Q  598 caagaaacagaccaaattgctttgttccatgcgtgaactcgtttttatgtcgggttcagtttggtctgacgattcggttcagttttataattgtgctgac 697  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32831729 caagaaacagaccaaattgctttgttccatacgtgaactcgtttttttgtcgggttcagtttggtctgacgattcggttcagttttataattgtgctgac 32831828  T
Q  698 tatgagtatgagtcatactgaaaattacctttcattacaagccatctaggagattcaggcatagctaaaa 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32831829 tatgagtatgagtcatactgaaaattacctttcattacaagccatctaggagattcaggcatagctaaaa 32831898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 23107762 - 23107715
Alignment:
Q  56 gggcttgtatttccgtgacttaggccccaagcaacttgggccctaagt 103  Q
    ||||||||||||| |||||||| ||||||| || ||||||||||||||    
T  23107762 gggcttgtatttcggtgacttacgccccaaacagcttgggccctaagt 23107715  T

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Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 54 - 208
Target Start/End: Original strand, 37519126 - 37519280
Alignment:
Q  54 atgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagttacgcttagagtgttctaggcacttttggaatccttctgaggcggccccc 153  Q
    ||||||||||||||| ||||||||||| |||| |||||||  |||||||||| | |  ||||||||||| |  || | ||| |||||||||||||| |||    
T  37519126 atgggcttgtatttctgtgacttaggctccaaacaacttgtaccctaagttatgttcggagtgttctagacgtttctagaagccttctgaggcggcgccc 37519225  T
Q  154 ttaggaggatacgccaaaggtcgtttgggcccttttggagagcgttgtgccctta 208  Q
    |||| ||||  |||| | |||||||||||||||| ||||| | ||||||||||||    
T  37519226 ttagaaggacgcgcctatggtcgtttgggcccttctggagggtgttgtgccctta 37519280  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 3100634 - 3100792
Alignment:
Q  50 ttttatgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagttacgcttagagtgttctaggcacttttggaatccttctgaggcggc 149  Q
    |||| ||||||||  ||||| |||||||||||||||| |||||||||||||||| ||| | |||| ||||||||   || | ||| |||||||||| |||    
T  3100634 ttttttgggcttggttttccatgacttaggccccaagtaacttgggccctaagtcacgttcagagcgttctaggtgtttctagaagccttctgaggtggc 3100733  T
Q  150 ccccttaggaggatacgccaaaggtcgtttgggcccttttggagagcgttgtgccctta 208  Q
     |||| || ||||  |||| | ||  |||  ||||||| ||||| ||||||||||||||    
T  3100734 gccctaagaaggacgcgcctagggctgttctggcccttctggagggcgttgtgccctta 3100792  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 21562793 - 21562687
Alignment:
Q  55 tgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagttacgcttagagtgttctaggcacttttggaatccttctgaggcggccccct 154  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||| | | ||||||||| ||||   ||| | ||| |||||||||||| | || |    
T  21562793 tgggcttgtatttccgtgacttaggccccaaataacttgggccttaagtcatgtttagagtgtactagatgcttctagaagccttctgaggcgacgccat 21562694  T
Q  155 taggagg 161  Q
    |||||||    
T  21562693 taggagg 21562687  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 22244665 - 22244718
Alignment:
Q  50 ttttatgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagt 103  Q
    |||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  22244665 ttttttgggcttgtatttccgtgacttaggccctaagtaacttaggccctaagt 22244718  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 34868066 - 34868128
Alignment:
Q  60 ttgtatttccgtgacttaggccccaagcaacttgggccctaagttacgcttagagtgttctag 122  Q
    |||| |||| |||||||||||||||| |||||||||||||| || | | ||||||||||||||    
T  34868066 ttgtctttctgtgacttaggccccaaacaacttgggccctacgtcaagtttagagtgttctag 34868128  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 43177076 - 43177139
Alignment:
Q  57 ggcttgtatttccgtgacttaggccccaagcaacttgggccctaagttacgcttagagtgttct 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  43177076 ggcttgtatttccgtgacttaggccccaagcaacttgggccctaagttaggtttagagcgttct 43177139  T

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Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 121078 - 121024
Alignment:
Q  50 ttttatgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagtta 105  Q
    ||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  121078 ttttatgggcttgtatttc-gtgacttaggccccaatcaacgtgggccctaagtta 121024  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 31275066 - 31275172
Alignment:
Q  55 tgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagttacgcttagagtgttctaggcacttttggaatccttctgaggcggccccct 154  Q
    ||||||||||||||| ||||||| ||||  | ||||||||||||||||| ||| ||||||| || ||||||||| |  || | |  ||||||||| ||||    
T  31275066 tgggcttgtatttccttgacttaagcccacaacaacttgggccctaagtcacgtttagagtattttaggcacttctaaaagcttgttgaggcggcgccct 31275165  T
Q  155 taggagg 161  Q
    |||||||    
T  31275166 taggagg 31275172  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 208
Target Start/End: Complemental strand, 940586 - 940434
Alignment:
Q  55 tgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagttacgcttagagtgttctaggcacttttggaatccttctgaggcggccccct 154  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||||| | | ||||||   |||||   ||| | ||| |||||||||||||| ||||    
T  940586 tgggcttgtttttccgtgacttagcccctaagcaacttgggccctaagtcatgtttagag-catctagatgcttctagaagccttctgaggcggcgccct 940488  T
Q  155 taggaggatacgccaaaggtcgtttgggcccttttggagagcgttgtgccctta 208  Q
    | ||||||  || | | ||  |||||||||||| | ||| ||| ||||||||||    
T  940487 tcggaggacgcgtctagggctgtttgggcccttctagagggcggtgtgccctta 940434  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 14753800 - 14753751
Alignment:
Q  54 atgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagt 103  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  14753800 atgggcttgtatttccgtgacttaagccccaagcaatttgggccttaagt 14753751  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 41301818 - 41301865
Alignment:
Q  56 gggcttgtatttccgtgacttaggccccaagcaacttgggccctaagt 103  Q
    ||||||||||||| |||||||| |||||||| |||||| |||||||||    
T  41301818 gggcttgtatttctgtgacttaagccccaagtaacttgagccctaagt 41301865  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 20805807 - 20805915
Alignment:
Q  55 tgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagttacgcttagagtgttctaggcacttttggaatccttctgaggcggccccct 154  Q
    ||||||||| |||| |||||||||| |||| | |||||||||||||||| ||  |||||| ||||||||  ||| | ||| |||||||||| ||  ||||    
T  20805807 tgggcttgtctttcagtgacttagggcccatgtaacttgggccctaagtcacatttagagcgttctaggtgcttctagaagccttctgaggtggtgccct 20805906  T
Q  155 taggaggat 163  Q
    ||| |||||    
T  20805907 tagtaggat 20805915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 18507623 - 18507669
Alignment:
Q  57 ggcttgtatttccgtgacttaggccccaagcaacttgggccctaagt 103  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  18507623 ggcttgtatttccgtgacttaagcccaaagtaacttgggccctaagt 18507669  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 28236023 - 28235978
Alignment:
Q  58 gcttgtatttccgtgacttaggccccaagcaacttgggccctaagt 103  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||    
T  28236023 gcttgtatttccgtgacttagaccccaagcaacttggactctaagt 28235978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 10649280 - 10649227
Alignment:
Q  50 ttttatgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagt 103  Q
    |||||||||||||||  || |||||||| |||||||||| |||||| |||||||    
T  10649280 ttttatgggcttgtaactcggtgacttaagccccaagcagcttgggtcctaagt 10649227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 9157352 - 9157400
Alignment:
Q  55 tgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagt 103  Q
    |||||||||||||| ||||||||  ||||||||| ||||||||||||||    
T  9157352 tgggcttgtatttcggtgacttaaaccccaagcagcttgggccctaagt 9157400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 31816400 - 31816352
Alignment:
Q  55 tgggcttgtatttccgtgacttaggccccaagcaacttgggccctaagt 103  Q
    |||||||||| ||| |||||||| |||||||||| ||||||||||||||    
T  31816400 tgggcttgtaattcggtgacttaagccccaagcagcttgggccctaagt 31816352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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