View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217Eco19 (Length: 244)
Name: NF0217Eco19
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Eco19 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 446781 - 446550
Alignment:
| Q |
10 |
aacaatgcgatggacattgctccacaaacacatattattgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
446781 |
aacaatgcgatggacattgctccacaaacacatattattgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaat |
446682 |
T |
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| Q |
110 |
ataatcaatttcatattaattaatttgatggggcaacaaaaataggttgagtgtagttagaaatttaccctgcaaaggctgctattacaaatgtgattgc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
446681 |
ataatcaatttcatattaattaatttgatggggcaacaaaaataggttgagtgtagttagaaatttaccctgcaaaggctgctattacaaatgtgattgc |
446582 |
T |
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| Q |
210 |
tggaataagattgttcatggcacttgcaattg |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
446581 |
tggaataagattgttcatggcacttgcaattg |
446550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 467792 - 467679
Alignment:
| Q |
9 |
caacaatgcgatggacattgctccacaaacacatattattgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaa |
108 |
Q |
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||||||||| || |||| |||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||| |
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| T |
467792 |
caacaatgcaattgacactgctccacttacacatataattgtccccactattttggctatagttcttatacttcgaatattcactttttccattctgtaa |
467693 |
T |
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| Q |
109 |
tataatcaatttca |
122 |
Q |
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|||||||||||||| |
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| T |
467692 |
tataatcaatttca |
467679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 474826 - 474723
Alignment:
| Q |
9 |
caacaatgcgatggacattgctccacaaacacatattattgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaa |
108 |
Q |
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||||||||| || |||| |||||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |
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| T |
474826 |
caacaatgctatagacaatgctccacaaacacatattaatgtccctactattttggctatagttctcaaacttcgaatgttgactttctccattctgtaa |
474727 |
T |
|
| Q |
109 |
tata |
112 |
Q |
| |
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|||| |
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| T |
474726 |
tata |
474723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 480173 - 480068
Alignment:
| Q |
9 |
caacaatgcgatggacattgctccacaaacacatattattgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaa |
108 |
Q |
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||||||||| || || | |||||||| | |||||| | ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
480173 |
caacaatgcaatagatactgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatttactttctccattctgtaa |
480074 |
T |
|
| Q |
109 |
tataat |
114 |
Q |
| |
|
|||||| |
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| T |
480073 |
tataat |
480068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 455495 - 455399
Alignment:
| Q |
22 |
gacattgctccacaaacacatattattgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataatcaat |
118 |
Q |
| |
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|||| ||||||| ||||||||| ||||| || |||||||||||||||||||||| |||| ||||||| | |||||||||||||||||||| ||||| |
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| T |
455495 |
gacactgctccagtaacacatatcattgtcccaactattttggctatagttctcaaactttgaatattcactttctccattctgtaatatattcaat |
455399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 479987 - 479923
Alignment:
| Q |
174 |
ttaccctgcaaaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaa |
238 |
Q |
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||||||| |||||||||||||||||||||||| |||||||| ||| ||| |||||||||||||| |
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| T |
479987 |
ttaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaa |
479923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 474650 - 474584
Alignment:
| Q |
175 |
taccctgcaaaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaattg |
241 |
Q |
| |
|
|||| ||||| | ||||||| |||||||||| ||| |||||||||||| |||||||||||||||||| |
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|
| T |
474650 |
taccttgcaaggactgctataacaaatgtgactgcaggaataagattggtcatggcacttgcaattg |
474584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 467623 - 467559
Alignment:
| Q |
174 |
ttaccctgcaaaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaa |
238 |
Q |
| |
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||||||| | |||||||| ||||||||||||| ||| |||| ||||||| ||||||||||||| |
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| T |
467623 |
ttaccctactaaggctgcaattacaaatgtgactgccggaagaagattggaaatggcacttgcaa |
467559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 27491566 - 27491647
Alignment:
| Q |
27 |
tgctccacaaacacatattattgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaa |
108 |
Q |
| |
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|||||||| |||| ||| |||||||| | |||||||||||||||||||| ||||| |||||| | || ||||||||||||| |
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| T |
27491566 |
tgctccacttacacctataattgttcctattattttggctatagttctcaaacttctaatattcacttgctccattctgtaa |
27491647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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