View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0217Eco2 (Length: 225)
Name: NF0217Eco2
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0217Eco2
Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 3519082 - 3518942
Alignment:
Q
82
ctataatatgtctgaactataaacctgatgttttagccgggaatttttctaccacaatgtgatcaaaatagcaaatgccaaaataatttgaaatgatgat
181
Q
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
T
3519082
ctataatgtgtctgaactatatgcctgatgttttagccgggaatttttctaccacaatgtgatcaaagtagcaaatgccaaaataatttgaaatgatgat
3518983
T
Q
182
gatcccgatagacatttataaatttgaagattaatcaattg
222
Q
||||||||| |||||||||||||||||||||||||||||||
T
3518982
gatcccgatggacatttataaatttgaagattaatcaattg
3518942
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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