View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0217Eco28 (Length: 268)
Name: NF0217Eco28
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Eco28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 32535147 - 32535403
Alignment:
| Q |
8 |
aaaatgggcatctgtatgtgtatatagttagagggagagatgtacatctagnnnnnnnnattattatttgacgagaataagaacaaaagtagctgaatta |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32535147 |
aaaatgggcatctgtatgtgtatatagttagagggagagatgtacatctagtttttttttttattatttgacgagaataagaacaaaagtagctgaatta |
32535246 |
T |
|
| Q |
108 |
attaagttgaaagtagatcgagagggtaaaatattctccatctagagagaagatgttggttttggagtgcatgaatgtaaaagaatctagtttttggtag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32535247 |
attaagttgaaagtagatcgagagggtaaaatattctccatctagagagaagatgttggttttggagtgcatgaatgtaaaagaatctagtttttggtag |
32535346 |
T |
|
| Q |
208 |
aaggaaacaacatgcagtttgactgtaacatatcgtcctttaacaaagatttgaatt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
32535347 |
aaggaaacaacatgcagtttgactgtaacatatcgtcctttaacaaataattgaatt |
32535403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1945 times since January 2019
Visitors: 2394