View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0217Eco29 (Length: 724)
Name: NF0217Eco29
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Eco29 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 9 - 678
Target Start/End: Complemental strand, 39473884 - 39473213
Alignment:
| Q |
9 |
cagagagttgaagagaatagtaatagtagtaatgtatattttttcaatgcagtgcagaacttctttgttgacatatttttaacttttcaataatttttta |
108 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39473884 |
cagagagttgaagagagtagtaatagtagtaatgtatattttttcaatgcagtgcagaacttctttgttgacatatttttaacttttcaataatttttta |
39473785 |
T |
|
| Q |
109 |
ttcctatggatgagaatgaaatcgatagaatcatttggaaactgctatacnnnnnnnnnnngtatttgaca--gatanctaaaangtaancttaaaagta |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||| |||||||||| |
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| T |
39473784 |
ttcctatggatgagaatgaaatcgatagaatcatttggaaactgctatacaaaaaaaaat-gtatttgacaaagatatctaaaaagtaaacttaaaagta |
39473686 |
T |
|
| Q |
207 |
nttttcaaatagtaanccctaangaaaatagancatttancataagacaaagaanttnggaancgatagaancattnggaancngctacccnnnnnnnga |
306 |
Q |
| |
|
|||| ||||||||| | |||| ||||||||| |||||| ||| ||||||| || || |||| |||||||| |||| |||| | ||||| | || |
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| T |
39473685 |
attttaaaatagtaaacactaaagaaaatagatcatttagcatcagacaaaaaaatttggaatcgatagaatcatttggaaacagctacacaaaaaaaga |
39473586 |
T |
|
| Q |
307 |
aatngtatttgacaangatatnctaaanctaaaangtaancttaaaagancaaggggtttngttacncaaaagaagcaangggatcaactgcagcctact |
406 |
Q |
| |
|
||| ||||||||||| ||||| ||||| |||||| |||| ||||||||| ||| |||||| ||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
39473585 |
aattgtatttgacaatgatattctaaatctaaaaagtaaacttaaaagatcaatgggttttgttactcaaaagaagcaatgggatcaactgcagcctact |
39473486 |
T |
|
| Q |
407 |
acaattaagtctgcccttataaaaaagggtaaaaanggctngcncacataacancatccttttacttcataccngattcataatataancaaccaaacga |
506 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||||||| ||| |
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| T |
39473485 |
acaattaagtctgcccttataaaaaatggtaaaaaaggcttgctcacataacaacatccttttacttcatacctgattcataatataatcaaccaatcga |
39473386 |
T |
|
| Q |
507 |
cctaaatatgcgtaagaagatccaccttctaacaaagncttcttacttttttcactcatctctttcactttcttccttacatctccatccttatccaaca |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39473385 |
cctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcactttcttccttacatctccatccttatccaaca |
39473286 |
T |
|
| Q |
607 |
cactccttatncccctctcaancttatcggcngttacaagatagttaggttcnccatt-aacnccgccctata |
678 |
Q |
| |
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|||||||||| || ||||||| ||||||||| ||||||||||||||||| | ||||| ||| |||||||||| |
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| T |
39473285 |
cactccttattcctctctcaatcttatcggcagttacaagatagttaggcgcaccattaaactccgccctata |
39473213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 472 - 655
Target Start/End: Complemental strand, 39476902 - 39476719
Alignment:
| Q |
472 |
ttcataccngattcataatataancaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagncttcttacttttttcactcatctcttt |
571 |
Q |
| |
|
|||||||| || |||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
39476902 |
ttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttactcttttcactcatctcttt |
39476803 |
T |
|
| Q |
572 |
cactttcttccttacatctccatccttatccaacacactccttatncccctctcaancttatcggcngttacaagatagttagg |
655 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| || | ||||| |||||||| ||||||||||||||||| |
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| T |
39476802 |
cactttcttccttacatctgcatccttatccaacacactccttattcctcgctcaattttatcggcagttacaagatagttagg |
39476719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 486 - 655
Target Start/End: Original strand, 39463354 - 39463523
Alignment:
| Q |
486 |
ataatataancaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagncttcttacttttttcactcatctctttcactttcttcctta |
585 |
Q |
| |
|
||||||||| ||| ||||||||||||||| | ||| |||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39463354 |
ataatataatcaatcaaacgacctaaataagtgtaggaagatcctccctctaacaaagtcttcttacttttttcactcatctctttcactttcttcctta |
39463453 |
T |
|
| Q |
586 |
catctccatccttatccaacacactccttatncccctctcaancttatcggcngttacaagatagttagg |
655 |
Q |
| |
|
| |||||||||||||| |||||||||||||| || ||||||| |||||| || ||||||||||||||||| |
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|
| T |
39463454 |
cttctccatccttatctaacacactccttattcctctctcaatcttatcagcagttacaagatagttagg |
39463523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 475 - 655
Target Start/End: Complemental strand, 39487852 - 39487672
Alignment:
| Q |
475 |
ataccngattcataatataancaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagncttcttacttttttcactcatctctttcac |
574 |
Q |
| |
|
||||| |||||||||||||| ||| |||| |||||||||| | ||| ||||||||||| |||||||||| ||||||||| ||||||||||||||| |||| |
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| T |
39487852 |
atacctgattcataatataatcaatcaaatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcttactcttttcactcatctctatcac |
39487753 |
T |
|
| Q |
575 |
tttcttccttacatctccatccttatccaacacactccttatncccctctcaancttatcggcngttacaagatagttagg |
655 |
Q |
| |
|
||| ||||| | ||||||||||||||||||| | ||||||| || ||||||| |||||| || ||||||||||||||||| |
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|
| T |
39487752 |
ttttttcctgaattctccatccttatccaacaaattccttattcctctctcaatcttatccgcagttacaagatagttagg |
39487672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 475 - 666
Target Start/End: Original strand, 39457081 - 39457272
Alignment:
| Q |
475 |
ataccngattcataatataancaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagncttcttacttttttcactcatctctttcac |
574 |
Q |
| |
|
||||| ||| | |||||||| | | ||||||||||||||| | ||| |||||||| || ||||||| || |||||||||| | |||||||||||||||| |
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| T |
39457081 |
atacctgatacctaatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgctgcactcatctctttcac |
39457180 |
T |
|
| Q |
575 |
tttcttccttacatctccatccttatccaacacactccttatncccctctcaancttatcggcngttacaagatagttaggttcnccattaa |
666 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||| || ||||||| ||| ||||| |||| ||||||||||| || ||||||| |
|
|
| T |
39457181 |
tttcttccttacctctccatccttatccaacacactctttattcctctctcaatcttgtcggcagttaaaagatagttagactcgccattaa |
39457272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 475 - 654
Target Start/End: Complemental strand, 39484652 - 39484473
Alignment:
| Q |
475 |
ataccngattcataatataancaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagncttcttacttttttcactcatctctttcac |
574 |
Q |
| |
|
||||| |||||||||||||| ||| || | |||||||||| | ||| ||||||||||| |||||||||| |||| |||| || |||||||| | |||||| |
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|
| T |
39484652 |
atacctgattcataatataatcaatcagatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcctactcttctcactcatttttttcac |
39484553 |
T |
|
| Q |
575 |
tttcttccttacatctccatccttatccaacacactccttatncccctctcaancttatcggcngttacaagatagttag |
654 |
Q |
| |
|
||||||| | || ||||||||||||| ||||||||||||||| | ||||||| ||| ||||| ||||||||||||||| |
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|
| T |
39484552 |
tttcttcttaacctctccatccttatacaacacactccttattactctctcaatcttgtcggcacttacaagatagttag |
39484473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 501 - 664
Target Start/End: Complemental strand, 39461614 - 39461451
Alignment:
| Q |
501 |
aaacgacctaaatatgcgtaagaagatccaccttctaacaaagncttcttacttttttcactcatctctttcactttcttccttacatctccatccttat |
600 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||| || || ||||||||||| | |
|
|
| T |
39461614 |
aaacgacctaaatgactgtaagaagatccaccctctaacaaagttttcctactcttttcactcatctctttcactttctttctgacctctccatcctttt |
39461515 |
T |
|
| Q |
601 |
ccaacacactccttatncccctctcaancttatcggcngttacaagatagttaggttcnccatt |
664 |
Q |
| |
|
|||||||| ||||||| || ||||||| ||| || || ||||||||||||||||| || ||||| |
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|
| T |
39461514 |
ccaacacattccttattcctctctcaatcttgtcagcagttacaagatagttaggctcaccatt |
39461451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 475 - 655
Target Start/End: Complemental strand, 39456015 - 39455835
Alignment:
| Q |
475 |
ataccngattcataatataancaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagncttcttacttttttcactcatctctttcac |
574 |
Q |
| |
|
||||| | |||||||||||| ||| |||||||||||||| | | |||||||||| || |||||||||| |||||| || |||||||||||||||||||| |
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|
| T |
39456015 |
atacctggttcataatataatcaattaaacgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactcatctctttcac |
39455916 |
T |
|
| Q |
575 |
tttcttccttacatctccatccttatccaacacactccttatncccctctcaancttatcggcngttacaagatagttagg |
655 |
Q |
| |
|
| | ||||| | ||||||||||||||||| ||||||||||| || ||||||| ||| || | |||| |||||||||||| |
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|
| T |
39455915 |
tgttttcctaaactctccatccttatccaatacactccttattcctctctcaatcttgtccgaagttaaaagatagttagg |
39455835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 472 - 655
Target Start/End: Complemental strand, 39452390 - 39452207
Alignment:
| Q |
472 |
ttcataccngattcataatataancaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagncttcttacttttttcactcatctcttt |
571 |
Q |
| |
|
|||||||| | |||||||||||| ||| ||||||| |||||| | | |||||||| |||||||||| || ||||||||| ||||||||||||||||| |
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|
| T |
39452390 |
ttcatacctggttcataatataatcaattaaacgacttaaataaatggaggaagatcctccttctaacagagtcttcttactcttttcactcatctcttt |
39452291 |
T |
|
| Q |
572 |
cactttcttccttacatctccatccttatccaacacactccttatncccctctcaancttatcggcngttacaagatagttagg |
655 |
Q |
| |
|
|| ||| ||||| | ||||||||||||||||||||||||||||| || |||||| ||| || || || | |||||||||||| |
|
|
| T |
39452290 |
catttttttcctgaactctccatccttatccaacacactccttattcctttctcaatcttgtcagcagtcaaaagatagttagg |
39452207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 472 - 616
Target Start/End: Original strand, 43311313 - 43311457
Alignment:
| Q |
472 |
ttcataccngattcataatataancaaccaaacgacctaaatatgcgtaagaagatccaccttctaacaaagncttcttacttttttcactcatctcttt |
571 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||| |||||| | | ||| ||||||||||| |||||||| | |||| ||| | ||||||||||||||| |
|
|
| T |
43311313 |
ttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatctcttt |
43311412 |
T |
|
| Q |
572 |
cactttcttccttacatctccatccttatccaacacactccttat |
616 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
43311413 |
cactttcttccttacctctccatctgtttccaacacactccttat |
43311457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 545 - 654
Target Start/End: Original strand, 39452834 - 39452943
Alignment:
| Q |
545 |
cttcttacttttttcactcatctctttcactttcttccttacatctccatccttatccaacacactccttatncccctctcaancttatcggcngttaca |
644 |
Q |
| |
|
|||||||| | ||||||| ||||||| ||||||||| ||||| ||||||||||||| |||||||||| |||| || ||||||| || || || |||| | |
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|
| T |
39452834 |
cttcttacatgtttcacttatctcttgcactttctttcttacctctccatccttatacaacacactctttattcctctctcaattttgtccgcagttaaa |
39452933 |
T |
|
| Q |
645 |
agatagttag |
654 |
Q |
| |
|
||| |||||| |
|
|
| T |
39452934 |
agagagttag |
39452943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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