View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0217Eco30 (Length: 288)

Name: NF0217Eco30
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0217Eco30
NF0217Eco30
[»] chr4 (2 HSPs)
chr4 (4-279)||(22114330-22114602)
chr4 (4-102)||(38719621-38719719)
[»] chr7 (1 HSPs)
chr7 (4-279)||(45725719-45725991)
[»] chr8 (4 HSPs)
chr8 (4-128)||(27972713-27972837)
chr8 (4-128)||(28029982-28030106)
chr8 (164-279)||(27972564-27972679)
chr8 (164-279)||(28029833-28029948)
[»] chr5 (4 HSPs)
chr5 (4-128)||(27657961-27658085)
chr5 (4-128)||(4883785-4883909)
chr5 (168-279)||(4883637-4883748)
chr5 (168-279)||(27658122-27658233)
[»] chr3 (2 HSPs)
chr3 (170-280)||(22601486-22601596)
chr3 (70-121)||(22601385-22601436)
[»] chr2 (1 HSPs)
chr2 (164-228)||(36965830-36965894)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 22114330 - 22114602
Alignment:
Q  4 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattacccaacaacttaataaacctcaaatttgggtataataatgggg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22114330 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatgggg 22114429  T
Q  104 taaatccctaaaattacagaaaggggtaaacttatttgggnnnnnnnnnnnnnnnnnnnnttaaggttcaattacctttggaaattggcatgagaaaaat 203  Q
    |||||||||||||||||||||| ||   |||  |||||||                    ||| ||||||||||||||||||||| ||||||||||||||    
T  22114430 taaatccctaaaattacagaaatgg---aacgaatttgggaaaaaatggaaaaactaaaattagggttcaattacctttggaaatgggcatgagaaaaat 22114526  T
Q  204 tctctaccaaaattatattttgttccaacaaccctgaccacatatactcgttcacattgacattttagggtaataa 279  Q
    |||||||||||||||||||  |||||| ||||||| |||||| || |||||||||| |||||||||||||||||||    
T  22114527 tctctaccaaaattatattcagttccagcaaccctaaccacagatgctcgttcacagtgacattttagggtaataa 22114602  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 38719621 - 38719719
Alignment:
Q  4 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattacccaacaacttaataaacctcaaatttgggtataataatggg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38719621 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatggg 38719719  T

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Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 45725991 - 45725719
Alignment:
Q  4 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattacccaacaacttaataaacctcaaatttgggtataataatgggg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45725991 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatgggg 45725892  T
Q  104 taaatccctaaaattacagaaaggggtaaacttatttgggnnnnnnnnnnnnnnnnnnnnttaaggttcaattacctttggaaattggcatgagaaaaat 203  Q
    |||||||||||||||| ||||| ||   |||  |||||||                    ||| ||||||||||||||||||||| ||||||||||||||    
T  45725891 taaatccctaaaattatagaaatgg---aacgaatttgggaaaaaatggaaaaactaaaattagggttcaattacctttggaaatgggcatgagaaaaat 45725795  T
Q  204 tctctaccaaaattatattttgttccaacaaccctgaccacatatactcgttcacattgacattttagggtaataa 279  Q
    |||||||||||||||||||  |||||| ||||||| |||||| || |||||||||| |||||||||||||||||||    
T  45725794 tctctaccaaaattatattcagttccagcaaccctaaccacagatgctcgttcacagtgacattttagggtaataa 45725719  T

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Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 27972837 - 27972713
Alignment:
Q  4 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattacccaacaacttaataaacctcaaatttgggtataataatgggg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27972837 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatgggg 27972738  T
Q  104 taaatccctaaaattacagaaaggg 128  Q
    |||||||||||||||||||||||||    
T  27972737 taaatccctaaaattacagaaaggg 27972713  T

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Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 28030106 - 28029982
Alignment:
Q  4 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattacccaacaacttaataaacctcaaatttgggtataataatgggg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28030106 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatgggg 28030007  T
Q  104 taaatccctaaaattacagaaaggg 128  Q
    |||||||||||||||||||||||||    
T  28030006 taaatccctaaaattacagaaaggg 28029982  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 164 - 279
Target Start/End: Complemental strand, 27972679 - 27972564
Alignment:
Q  164 ttaaggttcaattacctttggaaattggcatgagaaaaattctctaccaaaattatattttgttccaacaaccctgaccacatatactcgttcacattga 263  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| ||||||| |||||| || |||||||||| |||    
T  27972679 ttaaggttcaattacctttggaaatgggcatgagaaaaattctctaccaaaattatattcagttccagcaaccctaaccacagatgctcgttcacagtga 27972580  T
Q  264 cattttagggtaataa 279  Q
    | ||||||||||||||    
T  27972579 ctttttagggtaataa 27972564  T

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Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 164 - 279
Target Start/End: Complemental strand, 28029948 - 28029833
Alignment:
Q  164 ttaaggttcaattacctttggaaattggcatgagaaaaattctctaccaaaattatattttgttccaacaaccctgaccacatatactcgttcacattga 263  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| ||||||| |||||| || |||||||||| |||    
T  28029948 ttaaggttcaattacctttggaaatgggcatgagaaaaattctctaccaaaattatattcagttccagcaaccctaaccacagatgctcgttcacagtga 28029849  T
Q  264 cattttagggtaataa 279  Q
    | ||||||||||||||    
T  28029848 ctttttagggtaataa 28029833  T

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Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 27657961 - 27658085
Alignment:
Q  4 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattacccaacaacttaataaacctcaaatttgggtataataatgggg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27657961 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatgggg 27658060  T
Q  104 taaatccctaaaattacagaaaggg 128  Q
    |||||||||||||||||||||||||    
T  27658061 taaatccctaaaattacagaaaggg 27658085  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 4883909 - 4883785
Alignment:
Q  4 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattacccaacaacttaataaacctcaaatttgggtataataatgggg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||     
T  4883909 caattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatataaaaattaaccaacaacttaataaacctcaaatttgggtataataatggga 4883810  T
Q  104 taaatccctaaaattacagaaaggg 128  Q
    |||||||||||||||||||||||||    
T  4883809 taaatccctaaaattacagaaaggg 4883785  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 168 - 279
Target Start/End: Complemental strand, 4883748 - 4883637
Alignment:
Q  168 ggttcaattacctttggaaattggcatgagaaaaattctctaccaaaattatattttgttccaacaaccctgaccacatatactcgttcacattgacatt 267  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| ||||||| |||||| || |||||||||| |||||||    
T  4883748 ggttcaattacctttggaaatgggcatgagaaaaattctctaccaaaattatattcagttccagcaaccctaaccacagatgctcgttcacagtgacatt 4883649  T
Q  268 ttagggtaataa 279  Q
    ||||||||||||    
T  4883648 ttagggtaataa 4883637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 168 - 279
Target Start/End: Original strand, 27658122 - 27658233
Alignment:
Q  168 ggttcaattacctttggaaattggcatgagaaaaattctctaccaaaattatattttgttccaacaaccctgaccacatatactcgttcacattgacatt 267  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| ||||||| |||||| || |||||||||| |||||||    
T  27658122 ggttcaattacctttggaaatgggcatgagaaaaattctctaccaaaattatattcagttccagcaaccctaaccacagatgctcgttcacagtgacatt 27658221  T
Q  268 ttagggtaataa 279  Q
    ||||||||||||    
T  27658222 ttagggtaataa 27658233  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 22601486 - 22601596
Alignment:
Q  170 ttcaattacctttggaaattggcatgagaaaaattctctaccaaaattatattttgttccaacaaccctgaccacatatactcgttcacattgacatttt 269  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||| || |||   ||||| |||| || || ||| | || |||||||  || |||||     
T  22601486 ttcaattacctttgaaaatgggcatgagaaaaattctctacgaaaaatagattcaattccagcaactctaacaacagaaacgcgttcaccgtggcatttg 22601585  T
Q  270 agggtaataat 280  Q
    |||||||||||    
T  22601586 agggtaataat 22601596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 22601385 - 22601436
Alignment:
Q  70 ttaataaacctcaaatttgggtataataatggggtaaatccctaaaattaca 121  Q
    |||||||| |||||| | ||||||||||| ||||||||||| ||||||||||    
T  22601385 ttaataaatctcaaaatagggtataataagggggtaaatccttaaaattaca 22601436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 36965830 - 36965894
Alignment:
Q  164 ttaaggttcaattacctttggaaattggcatgagaaaaattctctaccaaaattatattttgttc 228  Q
    ||||| |||||||||||||| |||| || |||||||||| |||| |||||||||| |||| ||||    
T  36965830 ttaagattcaattacctttgaaaatgggaatgagaaaaactctcaaccaaaattagatttagttc 36965894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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