View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0217Eco7 (Length: 309)
Name: NF0217Eco7
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Eco7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 26309908 - 26310209
Alignment:
| Q |
8 |
gggatgtatgaggatgatgatgatccatgagagtacatgcactgaagaatgagttatcaaacaacaaaaaggtttatg--caatgagtcttatgctagaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26309908 |
gggatgtatgaggatgatgatgatccatgagagtacatgcactgaagaatgagttatcaaacaacaaaaaggtttatgtgcaatgagtcttatgctagaa |
26310007 |
T |
|
| Q |
106 |
tattccatggtttccattgagttattgtgctcacacccaatatttgtattttaaaa-ttattttcatttcacaaatctttcaattatgtatttgtactct |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26310008 |
tattccatagtttccattgagttattgtgctcacacccaatatttgtattttaaaaattattttcatttcacaaatctttcaattatgtatttgtactct |
26310107 |
T |
|
| Q |
205 |
aagatgttggtaatgtaatgaaataatacactaaaataaatattataaataaattatttccttctctcttgattttggatgcgttgcaatgacctccaat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26310108 |
aagatgttggtaatgtaatgaaataatacactaaaataaatattataattaaattatttccttctctcttgattttggatgcgtagcaatgacctccaat |
26310207 |
T |
|
| Q |
305 |
tg |
306 |
Q |
| |
|
|| |
|
|
| T |
26310208 |
tg |
26310209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 43 - 306
Target Start/End: Original strand, 26315924 - 26316192
Alignment:
| Q |
43 |
catgcactgaagaatgagttatcaaacaacaaaaaggtttatgcaatgagtcttatgctagaatattccatggtttccattgagttattgtgctcacacc |
142 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||| | ||||||||| ||||||| |||||||||| |
|
|
| T |
26315924 |
catgcaatgaagaatgagttatcaaacgacaaaaagatttatgaaatgtatcttatgctagaatattcgacagtttccatttagttattctgctcacacc |
26316023 |
T |
|
| Q |
143 |
caatatttgtattttaaaattattttc---------atttcacaaatctttcaattatgtatttgtactctaagatgttggtaatgtaatgaaataatac |
233 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
26316024 |
caatatttgtatttt-aaattattttcattttcttaatttcataaatcttttaattatgcctttgtactctaagatgttggtaatgaaatgaaataagac |
26316122 |
T |
|
| Q |
234 |
actaaaataaatattataaataaattatttccttctctcttgattttggatgcgttgcaatgacctccaattg |
306 |
Q |
| |
|
||| || |||||||||||| || ||||||| || |||||||||||||||| | | |||| ||||||||||| |
|
|
| T |
26316123 |
act-aactaaatattataattagattattttct--tctcttgattttggatccatcacaataacctccaattg |
26316192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 26340236 - 26340429
Alignment:
| Q |
55 |
aatgagttatcaaacaacaaaaaggtttatgcaatgagtcttatgctagaatattccatggtttccattgagttattgtgctcacacccaatatttgtat |
154 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| || || ||||||||||||||| |||||||| |||||||||| || ||||||||| |||||| |
|
|
| T |
26340236 |
aatgagttatcaaatgacaaaaagatttatgcaatgtgtattgtgctagaatattccacaatttccatttagttattgtgatcgcacccaataattgtat |
26340335 |
T |
|
| Q |
155 |
tttaaaattatt---------ttcatttcacaaatctttcaattatgtatttgtactctaagatgttggtaatgtaatgaaataatacactaaa |
239 |
Q |
| |
|
||| || ||||| || ||||||||||||||| |||||||| |||||||| ||||||||||||| || ||| |||||| | |||||| |
|
|
| T |
26340336 |
ttttaatttattttaattttcttaatttcacaaatcttttaattatgtctttgtactttaagatgttggtattgaaattaaataagaaactaaa |
26340429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 17224326 - 17224273
Alignment:
| Q |
186 |
aattatgtatttgtactctaagatgttggtaatgtaatgaaataatacactaaa |
239 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| |||||||||| |||||||| |
|
|
| T |
17224326 |
aattatggatttgtactctaagatgtttgtaatgcaatgaaataaaacactaaa |
17224273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 2013670 - 2013601
Alignment:
| Q |
170 |
atttcacaaatctttcaattatgtatttgtactctaagatgttggtaatgtaatgaaataatacactaaa |
239 |
Q |
| |
|
||||||| || ||| ||| |||| |||||||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
2013670 |
atttcacgaaccttgcaactatggatttgtactctaagatgttggtaacgaaatgaaataaggcactaaa |
2013601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 1970505 - 1970443
Alignment:
| Q |
165 |
ttttcatttcacaaatctttcaattatgtatttgtactctaagatgttggtaatgtaatgaaa |
227 |
Q |
| |
|
|||| ||||||| || ||| ||| |||| |||||||||||||||||||||||| | ||||||| |
|
|
| T |
1970505 |
ttttaatttcacgaaccttgcaactatggatttgtactctaagatgttggtaacgaaatgaaa |
1970443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1155 times since January 2019
Visitors: 2389