View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0217Eco8 (Length: 734)
Name: NF0217Eco8
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Eco8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 9 - 618
Target Start/End: Original strand, 33715958 - 33716568
Alignment:
| Q |
9 |
caggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgct |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
33715958 |
caggttcaacatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaactatctaactcaggaaatttgacatctctgct |
33716057 |
T |
|
| Q |
109 |
aacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33716058 |
aacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaagttttaggttctgctttcttcttgatttgt |
33716157 |
T |
|
| Q |
209 |
tcaaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaa |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33716158 |
tcaaggacaacatccacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaa |
33716257 |
T |
|
| Q |
309 |
cttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttccattgattgtatcgac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33716258 |
cttgtgcttttacttctgtaacatcctattttgattccaggctttcccctggaacaggttctttgacagattttgcagagtttccattgattgtatcgac |
33716357 |
T |
|
| Q |
408 |
ggaactcatcactcccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgtttttcc |
507 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33716358 |
ggaactcatcactcccgcaacgttcacaatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgttgttcc |
33716457 |
T |
|
| Q |
508 |
tcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccatttctatgttgcttgcatctttaatcacacannnnnnnncctcaaaca |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
33716458 |
tcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccatttgtatgttgtttgcatctttaatcacacattttttatcctcaaaca |
33716557 |
T |
|
| Q |
608 |
acactttataa |
618 |
Q |
| |
|
||||||||||| |
|
|
| T |
33716558 |
acactttataa |
33716568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 684
Target Start/End: Original strand, 33720856 - 33720928
Alignment:
| Q |
615 |
ataagcattctctagcagttgagtaacactc-aaaggntttgatt-antttaggaacatat-agacatcagaa |
684 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||| ||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
33720856 |
ataaccattctctagcggttgagtaacactcaaaaggttttgattaattttaggaacatataagacatcagaa |
33720928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 9 - 684
Target Start/End: Original strand, 28697461 - 28698140
Alignment:
| Q |
9 |
caggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgct |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
28697461 |
caggttcatcatcaacatcttcattctcctcctgaaatttaaacttctcacaatcttcccaattccaacaatctgactcaagaaatttgacatctctgct |
28697560 |
T |
|
| Q |
109 |
aacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttgt |
208 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
28697561 |
aacaattattttattgctttgtggaagatagattctatagacttttgaagatgagttatagcctacaaaaatttcaggttctgttttcttcttgatttgt |
28697660 |
T |
|
| Q |
209 |
tcaaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaa |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28697661 |
tcaaggacaacatccacaacagaagatttaggcttgcttttaaaactgttaagaacgttattggacactcctttgttcatttgttcccatatggcatcaa |
28697760 |
T |
|
| Q |
309 |
cttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttccattgattgtatcgac |
407 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28697761 |
cttgtgcttttacttcagtaacatcctgttttagttccaggatttcccctgaaacaggttctttgacagattttgcagagtttccattgattgtatcgac |
28697860 |
T |
|
| Q |
408 |
ggaactcatcactcccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgtttttcc |
507 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| |||| |
|
|
| T |
28697861 |
ggaactcatcactcccgcaacgttcacgatagatggatggtggaggaacgcaacaccaacctgaatccttccatccttgggtacaacaacatgttgttcc |
28697960 |
T |
|
| Q |
508 |
tcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccatttctatgttgcttgcatctttaatcacacannnnnnnncctcaaaca |
607 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
28697961 |
tcatttatcaaatccaaggaaaagctcttgcctttcatttgaacattgaccatttctatgttgtttgcatctttaatcacacattttttatcctcaaaca |
28698060 |
T |
|
| Q |
608 |
acactttataagcattctctagcagttgagtaacactc-aaaggntttgatt-antttaggaacatat-agacatcagaa |
684 |
Q |
| |
|
|| | |||||| |||||||||||||||||||||||||| ||||| | ||||| | ||||||||||||| ||||||||||| |
|
|
| T |
28698061 |
actccttataaccattctctagcagttgagtaacactcaaaaggttatgattaattttaggaacatataagacatcagaa |
28698140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 9 - 684
Target Start/End: Complemental strand, 628143 - 627449
Alignment:
| Q |
9 |
caggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgct |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||| |
|
|
| T |
628143 |
caggttcaccatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaaatatttgactcaagaaatttgacatctctgct |
628044 |
T |
|
| Q |
109 |
aacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttgt |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
628043 |
aacaattactttgttgctttgtggaagatagattctatagacttttgaagatgagctatagcctacaaaaatttcaggttctgttttcttcttgatttgt |
627944 |
T |
|
| Q |
209 |
tcaaggacaacatcgacaacagaagattt---------------aggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgtt |
293 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
627943 |
tcaaggacaacatccacatcagaagattttgatcttgattctataggcttgcttttaaaactgttaataacgttattggacactcctttattcatttgtt |
627844 |
T |
|
| Q |
294 |
cccatatggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggctttccc-tggaacaggttctttgacagattttgcagagtttcc |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||| |||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
627843 |
cccatatggcatcaacttgtgcttttacttcagtaacatcctgttttagtttcaggatttcccctgaaacaggttctttgacagattttgtagagtttcc |
627744 |
T |
|
| Q |
393 |
attgattgtatcgacggaactcatcactcccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtaca |
492 |
Q |
| |
|
|||||||||||| | |||||||||||||||| || |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
627743 |
attgattgtatccatggaactcatcactcccgcagcgttcacgatagatggatggtggaagaatgcaacaccaacctgaatccttccttccttatgtaca |
627644 |
T |
|
| Q |
493 |
acaacatgtttttcctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccatttctatgttgcttgcatctttaatcacacann |
592 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
627643 |
gcaacatgttgttcctcattcatcaaatccaaggaaaagctcttgcatttcatttgaacattgaccatttctatattgtttgcatctgtaatcacacatt |
627544 |
T |
|
| Q |
593 |
nnnnnncctcaaacaacactttataagcattctctagcagttgagtaacactc-aaaggntttgatt-antttaggaacatat-agacatcagaa |
684 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||| ||||| ||||||| | ||||| ||||||| ||||||||||| |
|
|
| T |
627543 |
ttttatcctcaaacaacaccttataaccattctctagcagttgagtaacactcaaaaggttttgattaattttagaaacatataagacatcagaa |
627449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 392
Target Start/End: Complemental strand, 27711897 - 27711514
Alignment:
| Q |
10 |
aggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgcta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
27711897 |
aggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaactatctgactcaagaaatttgacatctatgcta |
27711798 |
T |
|
| Q |
110 |
acaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttgtt |
209 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
27711797 |
acaattactttgttgctttgtggaagatagattctatagacttttgaagatgagctataacctacaaaaatttcaggttctgttttcttcttgatttgta |
27711698 |
T |
|
| Q |
210 |
caaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaac |
309 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27711697 |
caaggacaacatccacagcagaagatttaggcttgcttttaaaactgttaataacgttattggacaggcctttattcatttgttcccatatggcatcaac |
27711598 |
T |
|
| Q |
310 |
ttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttcc |
392 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27711597 |
ttgtgcttttacttcagtaacatcctgttttggttccaggatttcccctggaacatgttctttgacagattttgcagagtttcc |
27711514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 232 - 325
Target Start/End: Complemental strand, 50793988 - 50793895
Alignment:
| Q |
232 |
agatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaacttgtgcttttacttct |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50793988 |
agatttaggcttgcttttaaaactgctaataactttattggacacacctttattcatttgttcccatatggcatcaacttcagcttttacttct |
50793895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 326 - 404
Target Start/End: Complemental strand, 50793815 - 50793736
Alignment:
| Q |
326 |
gtaacatcctattttggttccaggctt-tccctggaacaggttctttgacagattttgcagagtttccattgattgtatc |
404 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50793815 |
gtaacatcctgttttggttccaggcttgtccctggaacaggttctttgacagattttgcagaatttccattgattgtatc |
50793736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 50795050 - 50795007
Alignment:
| Q |
190 |
tgctttcttcttgatttgttcaaggacaacatcgacaacagaag |
233 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
50795050 |
tgctttcttcttgatttgttcaaggacagcatccacagcagaag |
50795007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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