View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0217_high_4 (Length: 220)

Name: NF0217_high_4
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0217_high_4
NF0217_high_4
[»] chr3 (8 HSPs)
chr3 (1-156)||(24982089-24982244)
chr3 (1-159)||(24497240-24497398)
chr3 (1-155)||(25085081-25085235)
chr3 (3-163)||(31825534-31825694)
chr3 (1-188)||(24923415-24923599)
chr3 (1-188)||(24919839-24920025)
chr3 (15-155)||(21584582-21584722)
chr3 (118-155)||(14858633-14858670)
[»] chr7 (3 HSPs)
chr7 (3-152)||(10575432-10575581)
chr7 (27-147)||(39954838-39954958)
chr7 (3-100)||(354450-354547)
[»] chr2 (1 HSPs)
chr2 (12-124)||(41027626-41027738)
[»] chr8 (1 HSPs)
chr8 (6-155)||(14261017-14261166)
[»] chr4 (3 HSPs)
chr4 (12-130)||(22898607-22898725)
chr4 (12-130)||(22950275-22950393)
chr4 (27-147)||(53328783-53328903)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 24982089 - 24982244
Alignment:
Q  1 ccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982089 ccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgt 24982188  T
Q  101 ctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982189 ctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaa 24982244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 24497398 - 24497240
Alignment:
Q  1 ccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgt 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||    
T  24497398 ccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgt 24497299  T
Q  101 ctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaaaaa 159  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  24497298 ctatgctttgaagagacaaggaagaaccctctatggttttggaggttgatgaagaaaaa 24497240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 25085081 - 25085235
Alignment:
Q  1 ccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||    
T  25085081 ccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgt 25085180  T
Q  101 ctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 155  Q
    |||||||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  25085181 ctatgctttgaagagacagggaagaaccctctatggttttggaggttgaagaaga 25085235  T

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Target: chr3; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 31825694 - 31825534
Alignment:
Q  3 agaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtct 102  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  31825694 agaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgtct 31825595  T
Q  103 atgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaaaaagaag 163  Q
    ||||||||||||| || ||||||||||||||||| ||||| |||||| |||||| ||||||    
T  31825594 atgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaagaagaagaag 31825534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 24923599 - 24923415
Alignment:
Q  1 ccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgt 100  Q
    |||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||| ||||||||||| || || ||||||||||||||    
T  24923599 ccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactgagcacgcaaggaggaagacagtgacagccatggatgttgt 24923500  T
Q  101 ctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaaaaagaagtagaagcactctttagtttattttt 188  Q
    |||||||||||||||||| ||||||||||||||||| || || ||||   |||||| | |||| |||| |||||||||||||||||||    
T  24923499 ctatgctttgaagagacagggaagaaccctctatggatttggaggtt---gaagaatatgaagaagaaacactctttagtttattttt 24923415  T

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Target: chr3; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 24920025 - 24919839
Alignment:
Q  1 ccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgt 100  Q
    ||||||||||||||||||||||||| |||||||| || |||||||| || ||||||||||||||||||||||||||||| || || ||||||||||| ||    
T  24920025 ccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactgagcacgctaggaggaagacagtgacagccatggatgtcgt 24919926  T
Q  101 ctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaagaaaaagaagtagaagcactctttagtttattttt 188  Q
    ||||||||||||||| || ||||||||||||||||| ||||| |||||| |  ||| | |||| ||||||||| ||||||||||||||    
T  24919925 ctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgctgaagatgaagaagaagcact-tttagtttattttt 24919839  T

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Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 21584722 - 21584582
Alignment:
Q  15 aagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaaga 114  Q
    ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| || |||||||||||||| || || ||||||||||| |||||||||||||    
T  21584722 aagattttcttggagaatgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaaga 21584623  T
Q  115 gacaaggaagaaccctctatggtttcggtggttgaagaaga 155  Q
    | ||||||||||| || ||||| ||||| ||||||||||||    
T  21584622 ggcaaggaagaacgctttatggattcggaggttgaagaaga 21584582  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 14858670 - 14858633
Alignment:
Q  118 aaggaagaaccctctatggtttcggtggttgaagaaga 155  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  14858670 aaggaagaaccctctacggttttggtggttgaagaaga 14858633  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 10575432 - 10575581
Alignment:
Q  3 agaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtct 102  Q
    |||||||| ||||||||||||||||||||||| ||  | ||||| ||||| ||||||||||| || |||||||| ||||| || || ||||||||||| |    
T  10575432 agaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgttt 10575531  T
Q  103 atgctttgaagagacaaggaagaaccctctatggtttcggtggttgaaga 152  Q
    | ||  | ||||||||||||||||||||||||||||||||||||||||||    
T  10575532 acgcgcttaagagacaaggaagaaccctctatggtttcggtggttgaaga 10575581  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 39954958 - 39954838
Alignment:
Q  27 gagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaa 126  Q
    ||||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | ||||| || ||||| |    
T  39954958 gagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaagga 39954859  T
Q  127 ccctctatggtttcggtggtt 147  Q
    | ||||| |||||||||||||    
T  39954858 ctctctacggtttcggtggtt 39954838  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 354450 - 354547
Alignment:
Q  3 agaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgt 100  Q
    ||||| || |||||||| |||||| |||||| |||  ||||||| ||||| ||||||||||| || |||||||||||| | || || |||||||||||    
T  354450 agaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgt 354547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 41027626 - 41027738
Alignment:
Q  12 ttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttga 111  Q
    ||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||||||||| ||||||||||| || ||||||||||| ||||| ||||    
T  41027626 ttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttatgcattga 41027725  T
Q  112 agagacaaggaag 124  Q
    |||||||||||||    
T  41027726 agagacaaggaag 41027738  T

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Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 14261166 - 14261017
Alignment:
Q  6 ggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatg 105  Q
    ||||| |||||||| |||||||||||||||||  | ||||| ||||| || ||||| || || ||||||||||| ||||| || ||||||||||| ||||    
T  14261166 ggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatg 14261067  T
Q  106 ctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 155  Q
    | ||||||||||||||||| ||  | ||||||||||| ||||||||||||    
T  14261066 cgttgaagagacaaggaaggactttgtatggtttcggaggttgaagaaga 14261017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 22898607 - 22898725
Alignment:
Q  12 ttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttga 111  Q
    |||||||| || ||||||||||||||  | ||||| || || ||||||||||||||||| |||||||| ||||| || |||||||| || |||||  | |    
T  22898607 ttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctca 22898706  T
Q  112 agagacaaggaagaaccct 130  Q
    ||||||| |||||||||||    
T  22898707 agagacagggaagaaccct 22898725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 22950275 - 22950393
Alignment:
Q  12 ttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttga 111  Q
    |||||||| || ||||||||||||||  | ||||| || || ||||||||||||||||| |||||||| ||||| || |||||||| || |||||  | |    
T  22950275 ttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctca 22950374  T
Q  112 agagacaaggaagaaccct 130  Q
    ||||||| |||||||||||    
T  22950375 agagacagggaagaaccct 22950393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 53328783 - 53328903
Alignment:
Q  27 gagaatgtgatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaa 126  Q
    ||||||||||| |||||||| || |||||||| ||||| ||| |  | ||||||||||| || ||||||||||| || ||| | ||||| || ||||| |    
T  53328783 gagaatgtgattcgtgatgctgtcacatacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaagga 53328882  T
Q  127 ccctctatggtttcggtggtt 147  Q
    | || || |||||||| ||||    
T  53328883 ctctttacggtttcgggggtt 53328903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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