View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217_low_1 (Length: 758)
Name: NF0217_low_1
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 436 - 657
Target Start/End: Complemental strand, 36339376 - 36339155
Alignment:
| Q |
436 |
ggttttccttgaccaagtctcatgcacgttttcttttaattgcactacctggtcacataaccgttgttatttacttggcactttatgttggtcattcctg |
535 |
Q |
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| T |
36339376 |
ggttttccttgaccaagtctcatgcacgttttcttttaattgcactacctggtcacataaccgttgttatttacttggcactttatgttggtcattcctg |
36339277 |
T |
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| Q |
536 |
attaacatgagacttagtttgtaaccgttaccattgatttattttaatgagttatttatatgattaagctacatggggagagaagaagaatagggatacg |
635 |
Q |
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| T |
36339276 |
attaacatgagacttagtttgtaaccgttaccattgatttattttaatgagttatttatatgattaagctacatggggagagaagaagaatagggatacg |
36339177 |
T |
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| Q |
636 |
taagttacattgagagagaaca |
657 |
Q |
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| T |
36339176 |
taagttacattgagagagaaca |
36339155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 169 - 347
Target Start/End: Complemental strand, 36339643 - 36339465
Alignment:
| Q |
169 |
aaactaattaacgttagcatatcgtaatccaccatgttgtcttgacaaattagatctatcaaaactttagagtcactttccacgataaagtttgaaatta |
268 |
Q |
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| T |
36339643 |
aaactaattaacgttggcatatcgtaatccaccatgttgttttgacaaaccagatctatcaaaactttagagtcacttttcacgatagagtttgaaatta |
36339544 |
T |
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| Q |
269 |
tttcactccaagctatctccataccttgcaacattgcgcggtttaaagcatcacaatgaccaattttccaagcatacac |
347 |
Q |
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| T |
36339543 |
tttcactccaagctatctccataccttgcaacattgcgcggtttagagcatcacaatgaccaattttccaagcatacac |
36339465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 36339807 - 36339727
Alignment:
| Q |
91 |
atcatcaatttatccgagataggattttaaagaatgagtaattttgaatagttcaattaaaccaagatcaaaattagcaaa |
171 |
Q |
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| T |
36339807 |
atcatcaatttatccgagataggattttaaagaatgagtaattttgaatagttcaattaaaccaagatcaaaattagcaaa |
36339727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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