View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217_low_2 (Length: 340)
Name: NF0217_low_2
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 9640176 - 9639879
Alignment:
| Q |
11 |
cacagatgcatgacgcagccgcaaagtgatcgcagcacatcaaaaaccttgagagtatgttcaaactgtctaatagtgttttactttgatttaacaggtg |
110 |
Q |
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| T |
9640176 |
cacagatgcatgacgcagccgcaaagtggtcgcagcacatcaaaaaccttgagagtatgttcaaactgtctaatagtgttttactttgatttaacaggtg |
9640077 |
T |
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| Q |
111 |
aaaaatcctcagagagatttgccaataggaattgcagcttcattgtctctatgttgtggattatatatgatagtatccatcgttgttgttggtttagtac |
210 |
Q |
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| T |
9640076 |
aaaaatcctcagagagatttgccaataggaattgcagcatcattgtcactatgttgtggattgtatatgatagtatccattgttgtggttggtttagtac |
9639977 |
T |
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| Q |
211 |
cttactatgatatcaatcctaacactcctatatcttctgcttttgctgccaatggaatgcaatgggcagcgtaagttctataaacttgcaactctatt |
308 |
Q |
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| T |
9639976 |
cttactatgatatcaatcccaacacccctatatcctctgcatttgctgtcaatggaatgcaatgggcagcgtaagttttataaatttgttactctatt |
9639879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 40 - 309
Target Start/End: Complemental strand, 9650199 - 9649930
Alignment:
| Q |
40 |
tcgcagcacatcaaaaaccttgagagtatgttcaaactgtctaatagtgttttactttgatttaacaggtgaaaaatcctcagagagatttgccaatagg |
139 |
Q |
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| T |
9650199 |
tcgcagcacatcaaaaaccttgagagtatgttcaaactgtctaatagtgttttactttgatttaacaggtgaaaaatcctcagagagatttgccactagg |
9650100 |
T |
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| Q |
140 |
aattgcagcttcattgtctctatgttgtggattatatatgatagtatccatcgttgttgttggtttagtaccttactatgatatcaatcctaacactcct |
239 |
Q |
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| T |
9650099 |
aattgcagcttcattgtcactatgttgtggattgtatatgatagtatccattgttgtggttggtttagtaccttactatgatatcaatcctaacacccct |
9650000 |
T |
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| Q |
240 |
atatcttctgcttttgctgccaatggaatgcaatgggcagcgtaagttctataaacttgcaactctatta |
309 |
Q |
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| T |
9649999 |
atatcttctgcttttgctgtcaatggaatgcaatgggctgcgtaagttttacaattttgcaactctatta |
9649930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 86 - 311
Target Start/End: Complemental strand, 9629996 - 9629772
Alignment:
| Q |
86 |
gtgttttactttgatttaacaggtgaaaaatcctcagagagatttgccaataggaattgcagcttcattgtctctatgttgtggattatatatgatagta |
185 |
Q |
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| T |
9629996 |
gtgttttactatgatc-aacaggtgaaaaatcctcaaagagatttgccaataggaattgcagcttcattgtctctatgttgtggattgtatatgatagta |
9629898 |
T |
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| Q |
186 |
tccatcgttgttgttggtttagtaccttactatgatatcaatcctaacactcctatatcttctgcttttgctgccaatggaatgcaatgggcagcgtaag |
285 |
Q |
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| T |
9629897 |
tccattgttgtggttggtttagtaccttactatgatatcaatcctaacactcctatatcttctgcttttgctgccaatggaatgcaatgggcagcgtaag |
9629798 |
T |
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| Q |
286 |
ttctataaacttgcaactctattatg |
311 |
Q |
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| T |
9629797 |
ttctataaacttgcaactctattatg |
9629772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 55 - 308
Target Start/End: Complemental strand, 9615530 - 9615279
Alignment:
| Q |
55 |
aaccttgagagtatgttcaaactgtctaatagtgttttactttgatttaacaggtgaaaaatcctcagagagatttgccaataggaattgcagcttcatt |
154 |
Q |
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| T |
9615530 |
aaccttgagagt--gtccaaactttctaatagtgttttactttgatctaacaggtgaaaaatcctcaaagagatttgccaattggaattgcagcttcatt |
9615433 |
T |
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| Q |
155 |
gtctctatgttgtggattatatatgatagtatccatcgttgttgttggtttagtaccttactatgatatcaatcctaacactcctatatcttctgctttt |
254 |
Q |
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|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
9615432 |
gtctctatgttgtggattgtatatgatagtatctattgttgttgttggtttagtaccttactatgatatcaatcctaacacccccatatcttctgctttt |
9615333 |
T |
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| Q |
255 |
gctgccaatggaatgcaatgggcagcgtaagttctataaacttgcaactctatt |
308 |
Q |
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|| | |||||||||||||||||||||||| ||| ||||| |||| |||||||| |
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| T |
9615332 |
gccgtcaatggaatgcaatgggcagcgtatgtttcataaatttgctactctatt |
9615279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 74 - 309
Target Start/End: Complemental strand, 9656182 - 9655947
Alignment:
| Q |
74 |
aactgtctaatagtgttttactttgatttaacaggtgaaaaatcctcagagagatttgccaataggaattgcagcttcattgtctctatgttgtggatta |
173 |
Q |
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|||| |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
9656182 |
aactttctaatagcgtttaactttgatctaacaggtgaaaaatcctcagagagatttgccactaggaattgcagcttcattgtcactatgttgtggattg |
9656083 |
T |
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| Q |
174 |
tatatgatagtatccatcgttgttgttggtttagtaccttactatgatatcaatcctaacactcctatatcttctgcttttgctgccaatggaatgcaat |
273 |
Q |
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| T |
9656082 |
tatatgatagtatccattgttgtggttggtttagtaccttactatgatatcaatcctaacacccctatatcttctgcttttgctgtcaatggaatgcaat |
9655983 |
T |
|
| Q |
274 |
gggcagcgtaagttctataaacttgcaactctatta |
309 |
Q |
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|||| ||||||||| || || |||||||||||||| |
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| T |
9655982 |
gggctgcgtaagttttacaattttgcaactctatta |
9655947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 104 - 287
Target Start/End: Original strand, 33643681 - 33643864
Alignment:
| Q |
104 |
acaggtgaaaaatcctcagagagatttgccaataggaattgcagcttcattgtctctatgttgtggattatatatgatagtatccatcgttgttgttggt |
203 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||| |||| |||||| ||| ||||||||||||| | |||||| | || || | ||||| |||||| |
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| T |
33643681 |
acaggtgaaaaatcctcaacgagatttgccactaggcattggtgcttcactgtttctatgttgtggaatgtatatgctggtctctgttgttgtggttggt |
33643780 |
T |
|
| Q |
204 |
ttagtaccttactatgatatcaatcctaacactcctatatcttctgcttttgctgccaatggaatgcaatgggcagcgtaagtt |
287 |
Q |
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||||||||||| |||| ||| ||||| | || || ||||| ||||| ||| | | | |||| ||||||||||| ||||||||| |
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| T |
33643781 |
ttagtaccttattatgctattgatcctgatacccccatatcctctgcattttccgaccatgggatgcaatgggccgcgtaagtt |
33643864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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