View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0217_low_5 (Length: 280)

Name: NF0217_low_5
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0217_low_5
NF0217_low_5
[»] chr2 (1 HSPs)
chr2 (21-280)||(11509534-11509793)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 11509793 - 11509534
Alignment:
Q  21 acatcatcaacaatggggttgacctgaaaaagcaaaaaggtatgattttgagagtgaaaaataaaaacccattagaggaagagtatgaaaaggggagaga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11509793 acatcatcaacaatggggttgacctgaaaaagcaaaaaggtatgattttgagagtgaaaaataaaaacccattagaggaagagtatgaaaaggggagaga 11509694  T
Q  121 aaggttacaatgtcgaaaacagaagagaaatcgatgcgtggacgagatttgagggagagaagttcggtttgagtgaggttggataaatggtaggttttga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11509693 aaggttacaatgtcgaaaacagaagagaaatcgatgcgtggacgagatttgagggagagaagttcggtttgagtgaggttggataaatggtaggttttga 11509594  T
Q  221 ttggatttgccatggaaatggaacagcgtgttcggtaattgatggtattgctaacagaga 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11509593 ttggatttgccatggaaatggaacagcgtgttcggtaattgatggtattggtaacagaga 11509534  T

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