View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0218-INSERTION1 (Length: 656)

Name: NF0218-INSERTION1
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0218-INSERTION1
NF0218-INSERTION1
[»] chr4 (1 HSPs)
chr4 (8-656)||(40125625-40126273)


Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 656
Target Start/End: Original strand, 40125625 - 40126273
Alignment:
Q  8 gaatacatacatagtttatgaatttaatataccagcaaatcataggtaaatgatttttgtgatcctaaattggctatatggccacacattgtagaaatgc 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40125625 gaatacatacatagtttatgaatttaatataccagaaaatcataggtaaatgatttttgtgatcctaaattggctatatggccacacattgtagaaatgc 40125724  T
Q  108 aggnnnnnnnnnnnnnnnnnngaaatgcaggtttttacttaacaacctctcttcatatttcatgtgattattgttttcagttttatgcatccccttcaac 207  Q
    |||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40125725 aggttttttaattttctttttgaaatgcaggtttttacttaacaacctctcttcatatttcatgtgattattgttttcagttttatgcatccccttcaac 40125824  T
Q  208 aaattaaagaattaactctcaaatcatagagggaagtcacccttcacatatgctgtacaactaagattttcaattcaaacatttctccaagtttaaatac 307  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  40125825 aaattaaagaattaactctcagatcatagagggaagtcacccttcccatatgctgtacaactaagatttgcaattcaaacatttctcgaagtttaaatac 40125924  T
Q  308 aacgctagtaatttgagtatctgattaagatctaattggcctgaaattgttgatgagacgctcgaggtgagaccgaatcatgcttccaaaagaaaatgtt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40125925 aacgctagtaatttgagtatctgattaagatctaattggcctgaaattgttgatgagacgctcgaggtgagaccgaatcatgcctccaaaagaaaatgtt 40126024  T
Q  408 ggtataacatctctactattgttactggatgatgaggattgagagtccctgtatggagaactttgagccaaaacaattgacccaccaatttctcttttta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40126025 ggtataacatctctactattgttactggatgatgaggattgagagtccctgtatggagaactttgagccaaaacaattgacccaccaatttctcttttta 40126124  T
Q  508 tcaactctactatattttcattcacatcttgacctgaacaacctgtaacatagaatgatcctattgctgcttcaccctctactccaaactcaattcttgt 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40126125 tcaactctactatattttcattcacatcttgacctgaacaacctgtaacatagagtgatcctattgctgcttcaccctctactccaaactcaattcttgt 40126224  T
Q  608 tatggataatccattctcatgaaatactcgtgtcaccttcgatagtagc 656  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  40126225 tatggataatccattctcatgaattacttgtgtcaccttcgatagtagc 40126273  T

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