View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0218-INSERTION10 (Length: 712)
Name: NF0218-INSERTION10
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218-INSERTION10 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 7 - 712
Target Start/End: Complemental strand, 40484338 - 40483638
Alignment:
| Q |
7 |
acaaatttacataccagcctcctctgctaacagtatccttttcaaatgaaagcttccaatcttgtcgataaccttccatatacaattctattattttaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40484338 |
acaaatttacataccagcctcctctgctaacagtatccttttcaaatgaaagcttccaatcttgtcgataaccttccatatacaattctattattttaag |
40484239 |
T |
|
| Q |
107 |
acctgcctgtagtgcaacagctaaaattaacacgggatcctttgtatatttaacaacaacttcaacttataaacgaacacattactcagccacatgtgtt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40484238 |
acctgcctgtagtgcaacagctaaaattaacacgggatcctttgtatatttaacaaaaacttcaacttataaacgaacacattactcagccacatgtgtt |
40484139 |
T |
|
| Q |
207 |
ttatatattacgtatatttaacaaaaacttcaacttataaatgaacacattactcagccacatgtgttttatatattatgaataaaaaattaagctgttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40484138 |
ttatatattacgtatatttaacaaaaacttcaacttataaatgaacacattactcagccacatgtgttttatat-----gaataaaaaattaagctgttt |
40484044 |
T |
|
| Q |
307 |
ctcttactttgggggtaaatgtggttaaaactccagaaacaaattttaaggcctcatatgacgattgagcagggtctgcatagatttctagaacaggtaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40484043 |
ctcttactttgggggtaaatgtggttaaaactccagaaacaaattttaaggcctcatatgacgattgagcagggtctgcatagatttctagaacaggtaa |
40483944 |
T |
|
| Q |
407 |
ccaggttctgttaaagtgctgatataagatgaatacattacagaaactagcacaggtattaggtcagctgtagagtacctcctttaaattttgtttgctc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40483943 |
ccaggttctgttaaagtgctgatataagatgaatacattacagaaactagcacaggtattaggtcagctgtagagtacctcctttaaattttgtttgctc |
40483844 |
T |
|
| Q |
507 |
agcaaaggctttggcctgtattaaatataggtattagctacgaaaattccagcattctaagatgttaggagaatgtagaaaattccgcgtacctgatcaa |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40483843 |
agcaaaggctttggcctgtattaaatataggtattagctacgaaaattccagcattctaagatgttaggagaatgcagaaaattccgcgtacctgatcaa |
40483744 |
T |
|
| Q |
607 |
tgttgccaggtccaatcaatacaagtgctacaccagatgcgtccattatatcctgttggtagagcaaaatcaaaacaagagagcgtaaagtgcagcttac |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40483743 |
tgttgccaggtccaatcaatacaagtgctacaccagatgcgtccattatatcctgttggtagagcaaaatcaaaacaagagaacgtaaagtgcagcttac |
40483644 |
T |
|
| Q |
707 |
aacata |
712 |
Q |
| |
|
|||||| |
|
|
| T |
40483643 |
aacata |
40483638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 645
Target Start/End: Complemental strand, 17647852 - 17647738
Alignment:
| Q |
529 |
aaatataggtattagctacgaaaattccagcattctaagatgttaggagaatgtagaaaattccgcgtacctgatcaatgttgccaggtccaatcaatac |
628 |
Q |
| |
|
|||||||||| ||||||| |||||| |||| |||||||| ||||||||||| || |||| | || | || |||||||||| ||| ||||||||||||| |
|
|
| T |
17647852 |
aaatataggtggtagctac-aaaattttagcaatctaagatattaggagaatgaagcaaatccagcat-ccagatcaatgtttccaagtccaatcaatac |
17647755 |
T |
|
| Q |
629 |
aagtgctacaccagatg |
645 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
17647754 |
aagtgccacactagatg |
17647738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1084 times since January 2019
Visitors: 2388