View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218-INSERTION11 (Length: 664)
Name: NF0218-INSERTION11
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218-INSERTION11 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 29444815 - 29445189
Alignment:
| Q |
8 |
ttgtcgtggtttcaatcatgcttttgataatttggtacataatacatcacaacctaatatatcatcccctcatcagctattctaattgtccgtaaaatgt |
107 |
Q |
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| T |
29444815 |
ttgtcgtggtttcaatcatgcttttgataatttggtacataatacattacaacctaatatatcatcccctcatcagctattctaattgtccataaaatgt |
29444914 |
T |
|
| Q |
108 |
aaagaaagcaaccatcatgcgacatgtgacagagattcacttacatttaatggacagtgcaaccgatttcattgaggcaataggatgggaaaattatgtt |
207 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29444915 |
aaaggaagcaaccatcatgtgacatgtgacagagattcacttacatttaatggacagtgcaaccgatttcattgaggcaataggatgggaaaattatgtt |
29445014 |
T |
|
| Q |
208 |
gtgtttctactttatttattttcttatcaaagtgtttatactttctagagatatggaaaatgttcatttgtttatgaaaatttaatttgtgtaaagaaga |
307 |
Q |
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| T |
29445015 |
gtgtttctactttatttattttcttatcaaagtgtttatactttctagagatatggaaaatgttcatttgtttatgaaaatttaatttgtgtaaagaaga |
29445114 |
T |
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| Q |
308 |
tgctgagtgtcttaatcaggaatcaattcggttctttatgtgaatttgtgtagcatagtcattgtggatggctga |
382 |
Q |
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| T |
29445115 |
tgctgagtgtcttaatcaggaatcaattcggttctttatgtgaatttatgtagcatagtcattgtggatgactga |
29445189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 374 - 664
Target Start/End: Original strand, 29445207 - 29445497
Alignment:
| Q |
374 |
gatggctgattcatgctgaataacgcagcagaaagccagaaaccaaagtaagaagtctaatgcagtgttggtgtcctcaagaggtggttctgaagcaccc |
473 |
Q |
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| T |
29445207 |
gatggctgattcatgctgaataacgcagcagaaagccagaaaccaaagtaagaagtctaatgcagtgttggtgtcctcaagaggtggttctgaagcaccc |
29445306 |
T |
|
| Q |
474 |
agcagtgttgatattccacaattgactgtagttaggaaggaaaatcaattgagtggaagaaaatgtaagatgctaacaaatttatttatttatttacaaa |
573 |
Q |
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| T |
29445307 |
agcagtgttgatattccacaattgactgtagttaggaaggaaaatcaattgagtggaagaaaatgtaagatgctaacaaatttatttatttatttacaaa |
29445406 |
T |
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| Q |
574 |
ggaaagcagcaaattttttaatcctttactttctgatagaattaattataaacagaatcgggttgagcatttattttcagcttttttactg |
664 |
Q |
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| T |
29445407 |
ggaaagcagcaaattttttaatcctttactttctgatagaattaattataaatagaatcgggttgagcatttattttcagattttttactg |
29445497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 374 - 591
Target Start/End: Complemental strand, 29421424 - 29421217
Alignment:
| Q |
374 |
gatggctgattcatgctgaataacgcagcagaaagccagaaaccaaagtaagaagtctaatgcagtgttggtgtcctcaagaggtggttctgaagcaccc |
473 |
Q |
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||||||| |||||||||||| ||||||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
29421424 |
gatggctcattcatgctgaacaacgcagcagaaaactaaaaaccaaagaaagaagtctaatgcagtgttggtgtcctcaagaggtagttctaaagcac-- |
29421327 |
T |
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| Q |
474 |
agcagtgttgatattccacaattgactgtagttaggaaggaaaatcaattgagtggaagaaaatgtaagatgctaacaaatttattta-tttatttacaa |
572 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||| ||||||| |
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| T |
29421326 |
----------atattccacaattgactgtagttaggaaggaaaatcacttgagtggaagaaaatgtaagagacaaacaaatttatttattttgtttacaa |
29421237 |
T |
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| Q |
573 |
aggaaagc-agcaaattttt |
591 |
Q |
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| T |
29421236 |
aggaaagctagcaaattttt |
29421217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 239 - 372
Target Start/End: Complemental strand, 29421646 - 29421511
Alignment:
| Q |
239 |
gtgtttatactttctagagatatggaaaatgttcatttgtttatgaaaatttaatttgtgtaaagaagatgctgagtgtcttaatcaggaatcaattcgg |
338 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||| || |
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| T |
29421646 |
gtgtttctactttctagagatatggaaaatgtccatttgtttatgaaagtttaatttgtggaaagaaaatgcggagtgtcttaatcaggaatcaatttgg |
29421547 |
T |
|
| Q |
339 |
ttctttatgtgaatt--tgtgtagcatagtcattgt |
372 |
Q |
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||||||||||||||| ||| ||||||||||||||| |
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| T |
29421546 |
ttctttatgtgaattcgtgtatagcatagtcattgt |
29421511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 29421791 - 29421729
Alignment:
| Q |
113 |
aagcaaccatcatgcgacatgtgacagagattcacttacatttaatggacagtgcaaccgatt |
175 |
Q |
| |
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| T |
29421791 |
aagcaaccatcatgtgatatgtgacagagattcacttgcatttcatggacaatgcaactgatt |
29421729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 29421677 - 29421634
Alignment:
| Q |
177 |
cattgaggcaataggatgggaaaattatgttgtgtttctacttt |
220 |
Q |
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| T |
29421677 |
cattgaggcaataggatgggaaaattatgacgtgtttctacttt |
29421634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 29454858 - 29454887
Alignment:
| Q |
12 |
cgtggtttcaatcatgcttttgataatttg |
41 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29454858 |
cgtggtttcaatcatgcttttgataatttg |
29454887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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