View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218-INSERTION2 (Length: 345)
Name: NF0218-INSERTION2
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218-INSERTION2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 55668789 - 55668452
Alignment:
| Q |
8 |
ataacactgacactatatgtgtgtatctctatctctctcatactatttatcctcgtcactttacacacaaaagtacatgacacatttgacctcaaactgt |
107 |
Q |
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| T |
55668789 |
ataacactgacactatacgtgtgtatctctatctctctcatactatttatcctcgtcactttacacacaaaagtacatgacacatttgacctcaaactgt |
55668690 |
T |
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| Q |
108 |
tgatgccaaaacataatttcattttaaaaataaattgagcacgagttaatgtctttctggcagttcgccaacgaatactgaatattttttctgtggatag |
207 |
Q |
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| T |
55668689 |
tgatgccaaaacataatttcattttaaaaataaattgagcacgagttaatgtctttctggcagttcgccaacgaatactgaatattttttctgtggatag |
55668590 |
T |
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| Q |
208 |
ccaatagatgaaggttctagtaataagtttgttgacagatttcatgtgactttccattttgtttcaatcaactgaatattttttcctttcattcctacag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55668589 |
ccaatagatgaaggttctagtaataagtttgttgacagatttcatgtgactttccattttgtttcaatcaactgaatattttttcctttcattcctacag |
55668490 |
T |
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| Q |
308 |
tttttggtttggattatttagtgcattgcttgactttc |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
55668489 |
tttttggtttggattatttagtgcattgcttgactttc |
55668452 |
T |
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