View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0218-INSERTION4 (Length: 585)

Name: NF0218-INSERTION4
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0218-INSERTION4
NF0218-INSERTION4
[»] chr2 (5 HSPs)
chr2 (109-279)||(34805688-34805857)
chr2 (536-585)||(13761749-13761799)
chr2 (535-584)||(24019844-24019894)
chr2 (536-585)||(41877699-41877749)
chr2 (532-578)||(23357113-23357160)
[»] chr8 (2 HSPs)
chr8 (536-585)||(39677348-39677398)
chr8 (537-585)||(29189850-29189899)
[»] chr6 (1 HSPs)
chr6 (536-584)||(22756520-22756569)
[»] chr5 (1 HSPs)
chr5 (539-585)||(16474746-16474793)
[»] chr4 (2 HSPs)
chr4 (538-584)||(21633949-21633996)
chr4 (537-584)||(36196837-36196885)
[»] chr1 (1 HSPs)
chr1 (535-577)||(28429016-28429059)
[»] scaffold0343 (1 HSPs)
scaffold0343 (536-585)||(9202-9252)
[»] chr7 (1 HSPs)
chr7 (532-585)||(23029758-23029812)
[»] chr3 (5 HSPs)
chr3 (536-585)||(31558327-31558377)
chr3 (537-585)||(2187325-2187374)
chr3 (517-585)||(5505805-5505874)
chr3 (542-585)||(39719305-39719349)
chr3 (534-585)||(44947330-44947382)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 5e-82; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 109 - 279
Target Start/End: Original strand, 34805688 - 34805857
Alignment:
Q  109 ccatttgtctagctttgataattttgcttgtggaagagattgtagaagtgctccaaagactccaacacactaatcacagcaataccttgaattgcaaagt 208  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34805688 ccatttgtctagctttgataatttt-cttgtggaaaagattgtagaagtgctccaaaggctccaacacactaatcacagcaataccttgaattgcaaagt 34805786  T
Q  209 aaagagaaagataaggacaagattgaaaggctctaacatcttgcctctttgtagcttctactaatttagtt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34805787 aaagagaaagataaggacaagattgaaaggctctaacatcttgcctctttgtagcttctactaatttagtt 34805857  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 536 - 585
Target Start/End: Original strand, 13761749 - 13761799
Alignment:
Q  536 agggtctgtttagtaagcc-actaaatgagcttatagcttatagcttataa 585  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  13761749 agggtctgtttggtaagcccactaaatgagcttatagcttatagcttataa 13761799  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 24019844 - 24019894
Alignment:
Q  535 aagggtctgtttagtaagcc-actaaatgagcttatagcttatagcttata 584  Q
    |||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  24019844 aagggtctgtttggtaagcccactaaatgagcttatagcttataacttata 24019894  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 536 - 585
Target Start/End: Original strand, 41877699 - 41877749
Alignment:
Q  536 agggtctgtttagtaag-ccactaaatgagcttatagcttatagcttataa 585  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||||||    
T  41877699 agggtatgtttggtaagtccactaaatgagcttatagcttatagcttataa 41877749  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 578
Target Start/End: Complemental strand, 23357160 - 23357113
Alignment:
Q  532 attaagggtctgtttagtaagcc-actaaatgagcttatagcttatag 578  Q
    ||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  23357160 attaagggtctgtttggtaagcccattaaatgagcttatagcttatag 23357113  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 536 - 585
Target Start/End: Original strand, 39677348 - 39677398
Alignment:
Q  536 agggtctgtttagtaagcc-actaaatgagcttatagcttatagcttataa 585  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  39677348 agggtctgtttggtaagcccactaaatgagcttatagcttatagcttataa 39677398  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 537 - 585
Target Start/End: Complemental strand, 29189899 - 29189850
Alignment:
Q  537 gggtctgtttagtaagc-cactaaatgagcttatagcttatagcttataa 585  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  29189899 gggtctgtttggtaagctcactaaatgagcttatagcttatagcttataa 29189850  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 536 - 584
Target Start/End: Original strand, 22756520 - 22756569
Alignment:
Q  536 agggtctgtttagtaagcc-actaaatgagcttatagcttatagcttata 584  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  22756520 agggtctgtttggtaagcccactaaatgagcttatagtttatagcttata 22756569  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 585
Target Start/End: Original strand, 16474746 - 16474793
Alignment:
Q  539 gtctgtttagtaagcc-actaaatgagcttatagcttatagcttataa 585  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||    
T  16474746 gtctgtttggtaagcccattaaatgagcttatagcttatagcttataa 16474793  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 584
Target Start/End: Complemental strand, 21633996 - 21633949
Alignment:
Q  538 ggtctgtttagtaagcc-actaaatgagcttatagcttatagcttata 584  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  21633996 ggtctgtttggtaagcctactaaatgagtttatagcttatagcttata 21633949  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 584
Target Start/End: Original strand, 36196837 - 36196885
Alignment:
Q  537 gggtctgtttagtaagcc-actaaatgagcttatagcttatagcttata 584  Q
    |||||||||| ||||||| | ||||||||||||||| ||||||||||||    
T  36196837 gggtctgtttggtaagcccattaaatgagcttatagtttatagcttata 36196885  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 577
Target Start/End: Original strand, 28429016 - 28429059
Alignment:
Q  535 aagggtctgtttagtaagcc-actaaatgagcttatagcttata 577  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  28429016 aagggtctgtttggtaagcccactaaatgagcttatagcttata 28429059  T

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Target: scaffold0343 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 585
Target Start/End: Original strand, 9202 - 9252
Alignment:
Q  536 agggtctgtttagtaagcc-actaaatgagcttatagcttatagcttataa 585  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||| |||||||    
T  9202 agggtctttttggtaagcccactaaatgagcttatagcttataccttataa 9252  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 532 - 585
Target Start/End: Original strand, 23029758 - 23029812
Alignment:
Q  532 attaagggtctgtttagtaagccacta-aatgagcttatagcttatagcttataa 585  Q
    |||| |||||||||| ||||| ||| | |||||||||||||||||||||||||||    
T  23029758 attatgggtctgtttggtaagacaccacaatgagcttatagcttatagcttataa 23029812  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 585
Target Start/End: Complemental strand, 31558377 - 31558327
Alignment:
Q  536 agggtctgtttagtaagcc-actaaatgagcttatagcttatagcttataa 585  Q
    ||||||||||| ||||||| |||||||||||||  ||||||||||||||||    
T  31558377 agggtctgtttggtaagcccactaaatgagctttgagcttatagcttataa 31558327  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 585
Target Start/End: Complemental strand, 2187374 - 2187325
Alignment:
Q  537 gggtctgtttagtaagcc-actaaatgagcttatagcttatagcttataa 585  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||| |||||    
T  2187374 gggtctgtttggtaagcccactaaatgagcttttagcttatagcctataa 2187325  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 585
Target Start/End: Original strand, 5505805 - 5505874
Alignment:
Q  517 attgaaagttttggaattaagggtctgtttagtaagccacta-aatgagcttatagcttatagcttataa 585  Q
    ||||||| ||| | || ||||||||||||| |||||||  |  |||||||||||||||||||||||||||    
T  5505805 attgaaactttcgaaactaagggtctgtttggtaagcccatctaatgagcttatagcttatagcttataa 5505874  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 542 - 585
Target Start/End: Complemental strand, 39719349 - 39719305
Alignment:
Q  542 tgtttagtaagc-cactaaatgagcttatagcttatagcttataa 585  Q
    ||||| |||||| |||||||| |||||||||||||||||||||||    
T  39719349 tgttttgtaagctcactaaataagcttatagcttatagcttataa 39719305  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 585
Target Start/End: Complemental strand, 44947382 - 44947330
Alignment:
Q  534 taagggtctgtttagtaa-gccactaaatgagcttatagcttatagcttataa 585  Q
    ||||||||||||| |||| ||||  ||| ||||||||||||||||||||||||    
T  44947382 taagggtctgtttggtaaagccatcaaacgagcttatagcttatagcttataa 44947330  T

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