View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0218-INSERTION6 (Length: 714)

Name: NF0218-INSERTION6
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0218-INSERTION6
NF0218-INSERTION6
[»] chr1 (12 HSPs)
chr1 (8-714)||(46937197-46937903)
chr1 (412-660)||(36276865-36277113)
chr1 (232-342)||(3950672-3950780)
chr1 (225-356)||(7991503-7991643)
chr1 (281-356)||(7347678-7347753)
chr1 (234-300)||(12764655-12764722)
chr1 (241-308)||(49825890-49825959)
chr1 (231-276)||(52659467-52659512)
chr1 (229-272)||(35426562-35426605)
chr1 (298-341)||(35488282-35488325)
chr1 (277-343)||(6025967-6026033)
chr1 (241-309)||(17473170-17473236)
[»] chr5 (16 HSPs)
chr5 (409-681)||(862206-862478)
chr5 (229-326)||(17124802-17124899)
chr5 (231-305)||(41970272-41970346)
chr5 (231-374)||(3147090-3147233)
chr5 (229-284)||(4272831-4272886)
chr5 (231-353)||(9634890-9635020)
chr5 (282-354)||(8928401-8928473)
chr5 (229-284)||(6586584-6586639)
chr5 (231-326)||(38346877-38346972)
chr5 (225-347)||(11257722-11257844)
chr5 (295-341)||(41015018-41015064)
chr5 (231-276)||(42440169-42440214)
chr5 (281-356)||(6202574-6202649)
chr5 (230-308)||(41028340-41028419)
chr5 (231-276)||(33534632-33534677)
chr5 (235-276)||(34156730-34156771)
[»] chr3 (17 HSPs)
chr3 (225-341)||(2990927-2991043)
chr3 (225-307)||(38884855-38884937)
chr3 (229-356)||(5033316-5033452)
chr3 (230-343)||(51616342-51616455)
chr3 (232-305)||(1237514-1237589)
chr3 (244-340)||(3133473-3133569)
chr3 (231-326)||(48605218-48605313)
chr3 (225-275)||(20901512-20901562)
chr3 (281-342)||(162902-162963)
chr3 (231-309)||(10275769-10275848)
chr3 (241-309)||(32250970-32251034)
chr3 (284-355)||(54084298-54084369)
chr3 (238-277)||(54838655-54838694)
chr3 (229-327)||(21754252-21754350)
chr3 (313-347)||(34357994-34358028)
chr3 (229-279)||(36060339-36060389)
chr3 (231-260)||(36303181-36303210)
[»] chr6 (14 HSPs)
chr6 (229-356)||(4886195-4886322)
chr6 (230-278)||(29166814-29166862)
chr6 (229-284)||(1912446-1912501)
chr6 (233-325)||(27968079-27968171)
chr6 (230-284)||(33532432-33532486)
chr6 (279-356)||(13427709-13427786)
chr6 (231-276)||(30530004-30530049)
chr6 (225-273)||(20808888-20808936)
chr6 (229-276)||(10393994-10394041)
chr6 (225-264)||(29165912-29165951)
chr6 (279-341)||(9163756-9163818)
chr6 (225-343)||(10156619-10156737)
chr6 (295-340)||(770343-770388)
chr6 (231-356)||(19148507-19148632)
[»] chr4 (16 HSPs)
chr4 (231-356)||(30617211-30617344)
chr4 (242-325)||(35522083-35522166)
chr4 (231-355)||(26275479-26275615)
chr4 (241-356)||(33714190-33714303)
chr4 (277-355)||(39305803-39305881)
chr4 (233-343)||(47485998-47486108)
chr4 (280-357)||(415129-415206)
chr4 (231-308)||(8520799-8520876)
chr4 (230-266)||(42647462-42647498)
chr4 (242-308)||(18968308-18968372)
chr4 (225-275)||(1099070-1099120)
chr4 (293-327)||(34581593-34581627)
chr4 (230-259)||(4447985-4448014)
chr4 (243-308)||(13939113-13939178)
chr4 (229-286)||(45554115-45554172)
chr4 (225-357)||(46899905-46900035)
[»] chr7 (21 HSPs)
chr7 (231-356)||(30900054-30900188)
chr7 (232-295)||(28726955-28727016)
chr7 (277-354)||(2898879-2898956)
chr7 (232-345)||(42114861-42114974)
chr7 (229-356)||(23117299-23117435)
chr7 (229-283)||(31809136-31809190)
chr7 (225-275)||(32736037-32736087)
chr7 (230-284)||(48517386-48517440)
chr7 (225-262)||(1668351-1668388)
chr7 (232-284)||(3593037-3593089)
chr7 (230-274)||(21173837-21173881)
chr7 (225-269)||(24673360-24673404)
chr7 (281-364)||(9336384-9336467)
chr7 (231-286)||(33710955-33711010)
chr7 (225-255)||(481075-481105)
chr7 (233-275)||(5627515-5627557)
chr7 (319-369)||(6894350-6894400)
chr7 (281-347)||(22686055-22686120)
chr7 (231-281)||(32612403-32612453)
chr7 (241-286)||(28976554-28976599)
chr7 (232-356)||(38622833-38622955)
[»] chr2 (8 HSPs)
chr2 (231-325)||(17504954-17505048)
chr2 (281-352)||(39597566-39597637)
chr2 (225-354)||(1813467-1813594)
chr2 (297-347)||(16733727-16733777)
chr2 (231-276)||(11521815-11521860)
chr2 (231-276)||(16866671-16866716)
chr2 (227-276)||(38434183-38434232)
chr2 (293-342)||(44460330-44460379)
[»] chr8 (9 HSPs)
chr8 (281-356)||(1310115-1310190)
chr8 (240-326)||(9112433-9112519)
chr8 (281-355)||(43935150-43935224)
chr8 (229-284)||(42822651-42822706)
chr8 (230-304)||(42822860-42822932)
chr8 (231-284)||(41686218-41686271)
chr8 (225-285)||(16900879-16900939)
chr8 (231-309)||(18899939-18900017)
chr8 (242-347)||(12138165-12138270)
[»] scaffold0223 (1 HSPs)
scaffold0223 (231-274)||(10620-10663)
[»] scaffold0085 (1 HSPs)
scaffold0085 (281-356)||(50793-50868)


Alignment Details
Target: chr1 (Bit Score: 663; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 8 - 714
Target Start/End: Complemental strand, 46937903 - 46937197
Alignment:
Q  8 ggtacttgttaaagattaaaatgaaaattcgtaggattggtcattgaaagtgatgcttccaacaaattagcagttgtttaaattccagatgaattataca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46937903 ggtacttgttaaagattaaaatgaaaattcgtaggattggtcattgaaagtgatgcttccaacaaattagcagttgtttaaattccagatgaattataca 46937804  T
Q  108 tctttaatttagtttctgcgacaactattatgttgaatactaggaaatatgataggtgagaaaaagacttactagtactaatttggtgtatcttagttca 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46937803 tctttaatttagtttctgctacaactattatgttgaatactaggaaatatgataggtgagagaaagacttactagtactaatttggtgtatcttagttca 46937704  T
Q  208 ttatcactggcagtgttatcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaata 307  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46937703 ttatcactggcagtgttaccacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacaatattttgtactaaata 46937604  T
Q  308 gcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagccgttatttaacaaaactgaccactggtatttatgttgttgcatgcggacta 407  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46937603 gcgcatcgcggaacaatagcactttgttcaaattccgctaagcaatagccgttatttaacaaaactgaccactggtatttatgttgttgcatgcggacta 46937504  T
Q  408 ttgaagagtgtcctcattgagccaacaagtggcaatacgggcatcggattggccttcttggcagcagccaaaggctacaagcttatcattacaatgcctg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46937503 ttgaagagtgtcctcattgagccaacaagtggcaatacgggcatcggattggccttcttggcagcagccaaaggctacaagcttatcattacaatgcctg 46937404  T
Q  508 cttcgatgagtcttgaaagaagaaccattcttctatcttttggagttgagttggttatgacagatcctgcaaagggaatgaaaggggcagttcagaaagc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46937403 cttcgatgagtcttgaaagaagaaccattcttctatcttttggagctgagttggttctgacagatcctgcaaagggaatgaaaggggcagttcagaaagc 46937304  T
Q  608 tgaagagatattaaccaagactccaaatgcctatacccttcagcaatttgaaagccccgccaatccaaaggtatctatctactcatttgttctaaaactt 707  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46937303 tgaagagatattaaccgagactccaaatgcctatatccttcagcaatttgaaaaccccgccaatccaaaggtatctatctactcatttgttctaaaactt 46937204  T
Q  708 tggcagt 714  Q
    |||||||    
T  46937203 tggcagt 46937197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 412 - 660
Target Start/End: Original strand, 36276865 - 36277113
Alignment:
Q  412 agagtgtcctcattgagccaacaagtggcaatacgggcatcggattggccttcttggcagcagccaaaggctacaagcttatcattacaatgcctgcttc 511  Q
    ||||||||||||||||||| || ||||| || || || || || ||||| ||| ||||||| || || || || || ||||| || || |||||||||||    
T  36276865 agagtgtcctcattgagcctactagtggaaacaccggtattggtttggcattcatggcagctgctaagggttataaacttattataaccatgcctgcttc 36276964  T
Q  512 gatgagtcttgaaagaagaaccattcttctatcttttggagttgagttggttatgacagatcctgcaaagggaatgaaaggggcagttcagaaagctgaa 611  Q
     ||||||||||| ||||||||||||||||   | ||||| | |||||| ||| | |||||||| || || || |||||||| || ||||||||||| |||    
T  36276965 aatgagtcttgagagaagaaccattcttcgcgcatttggtgctgagttagttctcacagatccagctaaaggcatgaaaggagctgttcagaaagccgaa 36277064  T
Q  612 gagatattaaccaagactccaaatgcctatacccttcagcaatttgaaa 660  Q
    |||||| || | |||||||| ||||| || |  ||||||||||||||||    
T  36277065 gagatactagcaaagactcccaatgcttacattcttcagcaatttgaaa 36277113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 232 - 342
Target Start/End: Complemental strand, 3950780 - 3950672
Alignment:
Q  232 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactt 331  Q
    |||||||||||||| |||||||||| |||||||| ||  ||||  ||  |||||||||||||||| ||||||||||||| ||| |||||||||||   ||    
T  3950780 aaaatagcggtttgctcaaattccgttatgcaacggtactata--gcagctatttcacattatttggtactaaatagcgtatcgcggaacaatagtgatt 3950683  T
Q  332 tgttcaaattc 342  Q
    |||||||||||    
T  3950682 tgttcaaattc 3950672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 225 - 356
Target Start/End: Complemental strand, 7991643 - 7991503
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccact---------atttcacattattttgtactaaatagcgaatca 315  Q
    ||||||| |||||||||||||||  |||||| ||| |||||| || ||||||||||||         |||||||| |||| |||||||||| ||| ||||    
T  7991643 atcacggtaaatagcggtttgttataattccactaagcaacactgctatagcgccactctagctgctatttcacaatattatgtactaaatggcgtatca 7991544  T
Q  316 cggaacaatagcactttgttcaaattccgctaagcaatagc 356  Q
    |||||||||||   |||||||||||| ||| | ||||||||    
T  7991543 cggaacaatagtggtttgttcaaatttcgcaatgcaatagc 7991503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 7347753 - 7347678
Alignment:
Q  281 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagc 356  Q
    |||||||||| ||||||||||||||||| | ||  |  |||||||||| ||||||||||||| |||| ||||||||    
T  7347753 ctatttcacaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattctgctatgcaatagc 7347678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 234 - 300
Target Start/End: Original strand, 12764655 - 12764722
Alignment:
Q  234 aatagcggtttgttcaaattcc-gctatgcaacagtgttatagcgccactatttcacattattttgta 300  Q
    ||||| |||||||||||||||| |||||||| ||||||||||| |||||||||| |||  ||||||||    
T  12764655 aatagtggtttgttcaaattccagctatgcaccagtgttatagtgccactatttgacaacattttgta 12764722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 49825959 - 49825890
Alignment:
Q  241 gtttgttcaaattccgctatgcaacagtg--ttatagcgccactatttcacattattttgtactaaatag 308  Q
    |||||||||||||| ||||||||||||||   |||||| |  |||||||||| |||||||||||||||||    
T  49825959 gtttgttcaaattctgctatgcaacagtgctatatagcactgctatttcacaatattttgtactaaatag 49825890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 52659512 - 52659467
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 276  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||    
T  52659512 gaaaatagcggtttgttcaaattccgtaacgcaacagtgttatagc 52659467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 35426562 - 35426605
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgtta 272  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||    
T  35426562 cggaaaatagtggtttgctcaaattcctctatgcaacagtgtta 35426605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 35488325 - 35488282
Alignment:
Q  298 gtactaaatagcgaatcacggaacaatagcactttgttcaaatt 341  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||    
T  35488325 gtactaaatagcgtatcccggaacaatagcagtttgttcaaatt 35488282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 343
Target Start/End: Original strand, 6025967 - 6026033
Alignment:
Q  277 gccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattcc 343  Q
    |||||||||| |||  |||||||||||||||||  ||| |||||||||| |  ||||||||||||||    
T  6025967 gccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaattcc 6026033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 17473236 - 17473170
Alignment:
Q  241 gtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagc 309  Q
    |||| |||| |||| ||| |||||||||||||||||| |  ||||| ||| ||||||||||||||||||    
T  17473236 gtttcttcatattctgctttgcaacagtgttatagcggc--tatttgacaatattttgtactaaatagc 17473170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 5e-64; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 409 - 681
Target Start/End: Original strand, 862206 - 862478
Alignment:
Q  409 tgaagagtgtcctcattgagccaacaagtggcaatacgggcatcggattggccttcttggcagcagccaaaggctacaagcttatcattacaatgcctgc 508  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||| ||||||| ||||| || |||||||| || ||||| ||||||||    
T  862206 tgaagagtgtcctcattgaaccaacaagtggtaatactggcattggattagccttcatggcagcggccaagggatacaagctcataattaccatgcctgc 862305  T
Q  509 ttcgatgagtcttgaaagaagaaccattcttctatcttttggagttgagttggttatgacagatcctgcaaagggaatgaaaggggcagttcagaaagct 608  Q
    ||| ||||||||||||||||||| ||||||  || ||||||||| ||| |||||| ||||||| |||||||||||||||||||| || ||||||||||||    
T  862306 ttcaatgagtcttgaaagaagaatcattctattagcttttggagctgaattggttttgacagaccctgcaaagggaatgaaaggagctgttcagaaagct 862405  T
Q  609 gaagagatattaaccaagactccaaatgcctatacccttcagcaatttgaaagccccgccaatccaaaggtat 681  Q
    |||||| | ||  | ||||| || |||||||| |  ||||| |||||||||| ||| |||||||| |||||||    
T  862406 gaagagctgttggctaagacacccaatgcctacatacttcaacaatttgaaaaccctgccaatcccaaggtat 862478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 17124802 - 17124899
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatag 326  Q
    ||||||| ||| ||||||||||||||| |||||| |||||||| |||| ||||||||| ||| || ||||| |||||||||| ||||||||| |||||    
T  17124802 cggaaaagagcagtttgttcaaattccactatgctacagtgttgtagcaccactatttaacaatactttgtcctaaatagcgcatcacggaataatag 17124899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 41970346 - 41970272
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaa 305  Q
    ||||||||||  |||||||||||| |||| |||||| || |||||||||||||||||||| ||||||||||||||    
T  41970346 gaaaatagcgccttgttcaaattctgctaagcaacaatgctatagcgccactatttcacaatattttgtactaaa 41970272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 231 - 374
Target Start/End: Original strand, 3147090 - 3147233
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcact 330  Q
    |||||||| ||||||||||||||||| || || |||||| |||||| ||||||||| ||| |  || || |||||||| | |||||| ||  |||||  |    
T  3147090 gaaaatagtggtttgttcaaattccgatacgctacagtgctatagcaccactatttgacaattcttagtgctaaatagtgtatcacgcaatgatagcggt 3147189  T
Q  331 ttgttcaaattccgctaagcaatagccgttatttaacaaaactg 374  Q
    || |||||||||| ||| || ||||||| ||||| |||| ||||    
T  3147190 ttcttcaaattccactacgctatagccgctatttgacaacactg 3147233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 4272886 - 4272831
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 284  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||    
T  4272886 cggaaaataacagtttgttcaaattccgctatgcaacagtgatatagcgcctctat 4272831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 231 - 353
Target Start/End: Original strand, 9634890 - 9635020
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgcc---------actatttcacattattttgtactaaatagcgaatcacggaac 321  Q
    ||||||||||||||||||||||||||||| |||||| || |||||||||          |||||||| | |||||| ||| |||||| | ||  ||||||    
T  9634890 gaaaatagcggtttgttcaaattccgctacgcaacattgctatagcgccgctatagttgctatttcaaaatattttatacaaaatagtgtat-gcggaac 9634988  T
Q  322 aatagcactttgttcaaattccgctaagcaat 353  Q
    ||||||  ||||||||||||||||||||||||    
T  9634989 aatagccatttgttcaaattccgctaagcaat 9635020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 8928401 - 8928473
Alignment:
Q  282 tatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaata 354  Q
    ||||||| | ||||||||||||||||||| ||||  ||||||||||  ||||||||||| |||||| ||||||    
T  8928401 tatttcagaatattttgtactaaatagcgtatcatcgaacaatagcgatttgttcaaatcccgctacgcaata 8928473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 6586639 - 6586584
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 284  Q
    ||||||||||||||||||||||||||| |||||||| |||  ||||||| ||||||    
T  6586639 cggaaaatagcggtttgttcaaattcctctatgcaatagttctatagcggcactat 6586584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 38346972 - 38346877
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatag 326  Q
    ||||||||||||| |||||||||  ||||  |||||||| |||||| || |||||| |||  |||||||| ||||||| | ||||| |||||||||    
T  38346972 gaaaatagcggttagttcaaattttgctacccaacagtgctatagcaccgctatttgacaacattttgtagtaaatagtgtatcacagaacaatag 38346877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 347
Target Start/End: Complemental strand, 11257844 - 11257722
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaat 324  Q
    ||||||||| |||| |||||| |||||| ||||||  |||  |||| |||||||| |||||| |||  |||||||||||||||||  |||    ||||||    
T  11257844 atcacggaagatagtggtttgatcaaataccgctacacaattgtgtgatagcgccgctatttgacaacattttgtactaaatagcatatcgtataacaat 11257745  T
Q  325 agcactttgttcaaattccgcta 347  Q
    |||  |||||||| |||||||||    
T  11257744 agcgatttgttcatattccgcta 11257722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 41015018 - 41015064
Alignment:
Q  295 tttgtactaaatagcgaatcacggaacaatagcactttgttcaaatt 341  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||||    
T  41015018 tttgtactaaatagcatatcacggaacaatagcagtttgttcaaatt 41015064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 42440214 - 42440169
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 276  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||    
T  42440214 gaaaacagtggtttgttcaaattccgctatgctacagtgttatagc 42440169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 6202649 - 6202574
Alignment:
Q  281 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagc 356  Q
    |||||||||||| ||||||||||||||||  |||||  | |||||||  |||||| |||||| |||| ||||||||    
T  6202649 ctatttcacattgttttgtactaaatagcatatcacatagcaatagcgatttgttaaaattctgctatgcaatagc 6202574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 41028419 - 41028340
Alignment:
Q  230 ggaaaatagcggtttgttcaaattccgctatgcaacagt-gttatagcgccactatttcacattattttgtactaaatag 308  Q
    |||||||||||| |||||||||||| |||| |||||||| ||| ||  |||  ||||||||| |||||||| ||||||||    
T  41028419 ggaaaatagcgggttgttcaaattcagctacgcaacagtggttctattgccggtatttcacaatattttgtgctaaatag 41028340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 33534632 - 33534677
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 276  Q
    ||||||||||||| |||||||||| |||| ||||||||| ||||||    
T  33534632 gaaaatagcggttggttcaaattctgctacgcaacagtgctatagc 33534677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 34156771 - 34156730
Alignment:
Q  235 atagcggtttgttcaaattccgctatgcaacagtgttatagc 276  Q
    ||||| |||||||||||||| |||||||||||||| ||||||    
T  34156771 atagctgtttgttcaaattctgctatgcaacagtgctatagc 34156730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 225 - 341
Target Start/End: Original strand, 2990927 - 2991043
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaat 324  Q
    ||||| |||||||| ||||  |||||||||||||||||||||||| ||||| |||||||||| |||  |||||||||||||||||| |||  |||||||     
T  2990927 atcacagaaaatagaggttcattcaaattccgctatgcaacagtgatatagggccactatttgacaacattttgtactaaatagcgtatcgtggaacaaa 2991026  T
Q  325 agcactttgttcaaatt 341  Q
    || | ||||||||||||    
T  2991027 agaaatttgttcaaatt 2991043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 38884855 - 38884937
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaata 307  Q
    |||||||||||||||||  |||||||||||| ||||||||  ||||||||||  | |||||||||| ||||||||||||||||    
T  38884855 atcacggaaaatagcggcctgttcaaattccactatgcaattgtgttatagcatcgctatttcacaatattttgtactaaata 38884937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 229 - 356
Target Start/End: Complemental strand, 5033452 - 5033316
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccact---------atttcacattattttgtactaaatagcgaatcacgga 319  Q
    ||||||||||| ||||||||||||||||||| ||||||  | ||||||||||||         |||||||  |||| |||||||||||| | ||||||||    
T  5033452 cggaaaatagcagtttgttcaaattccgctacgcaacacagctatagcgccactataactgcaatttcacgatattatgtactaaatagtgtatcacgga 5033353  T
Q  320 acaatagcactttgttcaaattccgctaagcaatagc 356  Q
    |||||||   |||||||||||| ||||| ||||||||    
T  5033352 acaatagttgtttgttcaaatttcgctatgcaatagc 5033316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 343
Target Start/End: Original strand, 51616342 - 51616455
Alignment:
Q  230 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcac 329  Q
    |||||||| |||| ||||||||||||||||||  ||||||  ||||| || |||||| |||  | | |||| ||||||||| |||  ||||||||| ||     
T  51616342 ggaaaataacggtctgttcaaattccgctatgttacagtgcaatagcaccgctatttgacaacactctgtattaaatagcgtatcgtggaacaataccag 51616441  T
Q  330 tttgttcaaattcc 343  Q
    ||||||||||||||    
T  51616442 tttgttcaaattcc 51616455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 1237589 - 1237514
Alignment:
Q  232 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgc--cactatttcacattattttgtactaaa 305  Q
    |||||||||  |||||||||||| |||| |||||| || ||||||||  |||||||||||| ||||||||||||||    
T  1237589 aaaatagcgccttgttcaaattctgctaagcaacaatgctatagcgcgccactatttcacaatattttgtactaaa 1237514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 3133569 - 3133473
Alignment:
Q  244 tgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaat 340  Q
    |||||||||||  | |||| |||||| |||||  || || |||||||| |||||||||||||||| | |||||| |||||||||  |||||||||||    
T  3133569 tgttcaaattctaccatgctacagtgctatagtcccgctgtttcacatcattttgtactaaatagtgtatcacgtaacaatagctatttgttcaaat 3133473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 231 - 326
Target Start/End: Original strand, 48605218 - 48605313
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatag 326  Q
    ||||| || ||||||||||||||||||| |||| ||| | ||||||||| ||| |||||  ||||| ||||||||||  | ||||| |||||||||    
T  48605218 gaaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgctacttcaccatatttcgtactaaataatgtatcacagaacaatag 48605313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 20901562 - 20901512
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatag 275  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||| |||||    
T  20901562 atcatggaaaatagcggtttgtacaaatttcgctatgcaacagtgctatag 20901512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 162963 - 162902
Alignment:
Q  281 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattc 342  Q
    |||||||||| ||||||||||||||||||| ||| | ||| |||| || |||||||||||||    
T  162963 ctatttcacaatattttgtactaaatagcgcatcgcagaataataacaatttgttcaaattc 162902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 10275769 - 10275848
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacatta-ttttgtactaaatagc 309  Q
    |||||||||  |||||||||||| |||||  | ||||||||||| ||||||||||| ||| || ||||||| ||||||||    
T  10275769 gaaaatagcaatttgttcaaattacgctacactacagtgttataacgccactatttgacaatatttttgtaataaatagc 10275848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 32250970 - 32251034
Alignment:
Q  241 gtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagc 309  Q
    |||||||||||||  |||||||||||    || |||||||||||||||||  |||||||||||||||||    
T  32250970 gtttgttcaaattgtgctatgcaaca----tacagcgccactatttcacagcattttgtactaaatagc 32251034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 54084369 - 54084298
Alignment:
Q  284 tttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatag 355  Q
    ||||||| ||||||| ||||||||||| ||   |||||| || || |||||||||||||||||| |||||||    
T  54084369 tttcacaatattttgcactaaatagcgtattgtggaacattatcagtttgttcaaattccgctatgcaatag 54084298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 54838694 - 54838655
Alignment:
Q  238 gcggtttgttcaaattccgctatgcaacagtgttatagcg 277  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  54838694 gcggtttgttcaaattccgctgtgcaacagtgctatagcg 54838655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 21754350 - 21754252
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagc 327  Q
    |||||||| || | ||||| |||||  ||| ||||| |||| ||||||||| |||||| |||  | |||||||||||||| | ||| ||||||||||||    
T  21754350 cggaaaattgcagattgttgaaatttggctttgcaatagtgctatagcgccgctatttgacaacaatttgtactaaatagtgtatcgcggaacaatagc 21754252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 34357994 - 34358028
Alignment:
Q  313 tcacggaacaatagcactttgttcaaattccgcta 347  Q
    |||||||||||||||| ||||||||||||||||||    
T  34357994 tcacggaacaatagcaatttgttcaaattccgcta 34358028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 36060389 - 36060339
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgcc 279  Q
    |||||||||| ||||||||||||||  |||||||||||||  |||||||||    
T  36060389 cggaaaatagtggtttgttcaaattttgctatgcaacagtactatagcgcc 36060339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 260
Target Start/End: Complemental strand, 36303210 - 36303181
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctat 260  Q
    ||||||||||||||||||||||||||||||    
T  36303210 gaaaatagcggtttgttcaaattccgctat 36303181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 229 - 356
Target Start/End: Complemental strand, 4886322 - 4886195
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagca 328  Q
    ||||||||||| |||||||||||||| |||| |||||||||||||| ||||  ||||| ||| | ||||| ||||||||||  ||| |||||||||||      
T  4886322 cggaaaatagctgtttgttcaaattctgctacgcaacagtgttataccgccgttattttacaatgttttgcactaaatagcatatcgcggaacaatagag 4886223  T
Q  329 ctttgttcaaattccgctaagcaatagc 356  Q
     |||||||||||||| ||| ||||||||    
T  4886222 atttgttcaaattccactatgcaatagc 4886195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 29166862 - 29166814
Alignment:
Q  230 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgc 278  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  29166862 ggaaaatagcagtttgttcaaattccactatgcaacagtgttatagcgc 29166814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 1912446 - 1912501
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 284  Q
    |||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||    
T  1912446 cggaaaatagaggtttgttcaaattccgctatgcaacggtgctatagcgtcactat 1912501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 325
Target Start/End: Complemental strand, 27968171 - 27968079
Alignment:
Q  233 aaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaata 325  Q
    ||||||| ||||| ||||||| || ||||| | |||||||| ||||||||||||||||  | ||||||||||||| |  |||| |||||||||    
T  27968171 aaatagcagtttgctcaaatttcgatatgctaaagtgttatggcgccactatttcacaaaactttgtactaaataacatatcatggaacaata 27968079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 33532432 - 33532486
Alignment:
Q  230 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 284  Q
    ||||||||||||||||||||||||| ||||  |||||||| |||||||| |||||    
T  33532432 ggaaaatagcggtttgttcaaattctgctactcaacagtgctatagcgcaactat 33532486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 13427709 - 13427786
Alignment:
Q  279 cactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagc 356  Q
    |||||||||||| ||||||||||||||||  |  ||| |||||||||||  |||||| |||||| |||| ||||||||    
T  13427709 cactatttcacaatattttgtactaaataatgtgtcatggaacaatagcgatttgttgaaattctgctatgcaatagc 13427786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 30530004 - 30530049
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 276  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||    
T  30530004 gaaaatagcggtttgttcaaattctgctacgcaacagtgctatagc 30530049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 20808936 - 20808888
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttat 273  Q
    |||||||||||||| ||||||||||  |||| |||||||||||||||||    
T  20808936 atcacggaaaatagtggtttgttcatgttccactatgcaacagtgttat 20808888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 10393994 - 10394041
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 276  Q
    ||||||||||||||||||| ||||||||| ||| ||||||| ||||||    
T  10393994 cggaaaatagcggtttgtttaaattccgcaatggaacagtgctatagc 10394041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 29165951 - 29165912
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaa 264  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  29165951 atcacggaaaacagcggtttgttcaaattctgctatgcaa 29165912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 9163818 - 9163756
Alignment:
Q  279 cactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaatt 341  Q
    |||||||| |||  |||||||||||||||||| || ||||||||||||   ||||||||||||    
T  9163818 cactatttgacaacattttgtactaaatagcgtataacggaacaatagggatttgttcaaatt 9163756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 343
Target Start/End: Original strand, 10156619 - 10156737
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaat 324  Q
    ||||| |||||||||||||||||  |||| |||||| ||| |||||||||  ||| |||||| |||  ||||| |||| ||||| |  || | |||||||    
T  10156619 atcaccgaaaatagcggtttgtttgaatttcgctatacaatagtgttataaggccgctatttgacaacattttatacttaatagtgtgtcgcagaacaat 10156718  T
Q  325 agcactttgttcaaattcc 343  Q
    |  | ||||||||||||||    
T  10156719 aaaaatttgttcaaattcc 10156737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 770388 - 770343
Alignment:
Q  295 tttgtactaaatagcgaatcacggaacaatagcactttgttcaaat 340  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||    
T  770388 tttgtactaaatagcgtatcacggaacaataccgatttgttcaaat 770343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 356
Target Start/End: Original strand, 19148507 - 19148632
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcact 330  Q
    ||||||||||||||||||||| |||||||  |||||||| |||| |||  ||||||  |  |||| |||| ||||||||  ||   ||||||||| |  |    
T  19148507 gaaaatagcggtttgttcaaactccgctacacaacagtgctatatcgctgctattttgctatattctgtattaaatagcatatactggaacaataactat 19148606  T
Q  331 ttgttcaaattccgctaagcaatagc 356  Q
    |||||||||||| | || ||||||||    
T  19148607 ttgttcaaattctgttatgcaatagc 19148632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 231 - 356
Target Start/End: Original strand, 30617211 - 30617344
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc---------gccactatttcacattattttgtactaaatagcgaatcacggaac 321  Q
    ||||||||||||||||||||||||| ||| |||||| || ||||||         |||||||||||||| ||||||||||||| ||||| ||||| ||||    
T  30617211 gaaaatagcggtttgttcaaattccactacgcaacaatgctatagcatcgctattgccactatttcacaatattttgtactaa-tagcgtatcacagaac 30617309  T
Q  322 aatagcactttgttcaaattccgctaagcaatagc 356  Q
    | ||||  |||||||||||||||||| ||||||||    
T  30617310 actagcgatttgttcaaattccgctatgcaatagc 30617344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 35522166 - 35522083
Alignment:
Q  242 tttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaata 325  Q
    ||||||||||||||||||||||| |  ||||||||||| |||||||||| ||||||| ||||||||| | |||||| |||||||    
T  35522166 tttgttcaaattccgctatgcaagaacgttatagcgccgctatttcacaatattttgcactaaatagtgtatcacgaaacaata 35522083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 355
Target Start/End: Original strand, 26275479 - 26275615
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc------------gccactatttcacattattttgtactaaatagcgaatcacgg 318  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||             ||| |||||||||| ||||||||||||||||||| ||   ||    
T  26275479 gaaaatagcgatttgttcaaattccgctatgcaaaagtgttatagtagcaccggcatagccgctatttcacaatattttgtactaaatagcgtattttgg 26275578  T
Q  319 aacaatagcactttgttcaaattccgctaagcaatag 355  Q
    |||||||||  ||||||||||| |||||| |||||||    
T  26275579 aacaatagcgatttgttcaaatcccgctatgcaatag 26275615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 33714190 - 33714303
Alignment:
Q  241 gtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaat 340  Q
    ||||||||||||||||||| ||| |||||||||| || |  ||||||||| ||||||||||||||| ||  |||  ||||||| |||  |||||||||||    
T  33714190 gtttgttcaaattccgctacgcatcagtgttataacgtc--tatttcacaatattttgtactaaatggcttatcgtggaacaacagcgatttgttcaaat 33714287  T
Q  341 tccgctaagcaatagc 356  Q
    ||| |||  |||||||    
T  33714288 tccactatacaatagc 33714303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 39305881 - 39305803
Alignment:
Q  277 gccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatag 355  Q
    |||||||||||||| |||| ||||||||||||||||||  ||||||||||   | ||||||||||| |||| |||||||    
T  39305881 gccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 39305803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 47485998 - 47486108
Alignment:
Q  233 aaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcacttt 332  Q
    ||||||| ||||||| ||||||| | |  |||||||| ||| ||||| |||||||| | ||||||||||||||||||   || |||||||||||   |||    
T  47485998 aaatagcagtttgttaaaattccaccacacaacagtgctatggcgccgctatttcaaaatattttgtactaaatagcatgtcgcggaacaatagaggttt 47486097  T
Q  333 gttcaaattcc 343  Q
    |||||||||||    
T  47486098 gttcaaattcc 47486108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 415206 - 415129
Alignment:
Q  280 actatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagcc 357  Q
    |||||||||||  ||||||||||||||||| ||||||| |||||||||   |||||||||||| |||| || ||||||    
T  415206 actatttcacaacattttgtactaaatagcaaatcacgaaacaatagcgacttgttcaaattctgctatgctatagcc 415129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 8520876 - 8520799
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatag 308  Q
    |||||||| |||||| ||||||||||||| | |||| || |||||| ||||||||| |||  ||||||||| ||||||    
T  8520876 gaaaatagaggtttgatcaaattccgctacgtaacaatgctatagcaccactatttgacaacattttgtaccaaatag 8520799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 42647498 - 42647462
Alignment:
Q  230 ggaaaatagcggtttgttcaaattccgctatgcaaca 266  Q
    |||||||||||||||||||||||||||||| ||||||    
T  42647498 ggaaaatagcggtttgttcaaattccgctacgcaaca 42647462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 18968372 - 18968308
Alignment:
Q  242 tttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatag 308  Q
    |||||||||||| |||||||||| |||||||||  ||| |||||| |||  ||||||||||||||||    
T  18968372 tttgttcaaattacgctatgcaatagtgttata--gccgctatttgacaacattttgtactaaatag 18968308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 1099070 - 1099120
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatag 275  Q
    |||||| ||||||||| ||||||||||||| ||||  ||||||||||||||    
T  1099070 atcacgaaaaatagcgatttgttcaaattcagctacacaacagtgttatag 1099120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 327
Target Start/End: Complemental strand, 34581627 - 34581593
Alignment:
Q  293 attttgtactaaatagcgaatcacggaacaatagc 327  Q
    |||||||||||||||||| ||||||||||||||||    
T  34581627 attttgtactaaatagcgtatcacggaacaatagc 34581593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 4448014 - 4447985
Alignment:
Q  230 ggaaaatagcggtttgttcaaattccgcta 259  Q
    ||||||||||||||||||||||||||||||    
T  4448014 ggaaaatagcggtttgttcaaattccgcta 4447985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 13939113 - 13939178
Alignment:
Q  243 ttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatag 308  Q
    |||||| |||||||||||||||||||| |||| |||   | ||||||| ||||||||| |||||||    
T  13939113 ttgttctaattccgctatgcaacagtgctataacgctggtgtttcacaatattttgtagtaaatag 13939178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 45554115 - 45554172
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactattt 286  Q
    |||||||||| |||||| |||||||| || |||| |||||| | ||||||||||||||    
T  45554115 cggaaaatagtggtttgctcaaattctgccatgctacagtgctgtagcgccactattt 45554172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 357
Target Start/End: Original strand, 46899905 - 46900035
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaat 324  Q
    ||||| |||||| | | |||||||||||| | ||||||||||||||||||  ||  |||||||| ||||| |||| ||||| |||  ||||  | ||||     
T  46899905 atcacagaaaattgtgctttgttcaaatttccctatgcaacagtgttata--gctgctatttcatattatgttgtcctaaaaagcatatcattggacaaa 46900002  T
Q  325 agcactttgttcaaattccgctaagcaatagcc 357  Q
    |||| ||| ||||||||||  || |||||||||    
T  46900003 agcaattttttcaaattcctatatgcaatagcc 46900035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 231 - 356
Target Start/End: Original strand, 30900054 - 30900188
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc---------gccactatttcacattattttgtactaaatagcgaatcacggaac 321  Q
    |||||||| |||||| ||||||||||||||| ||||||  ||||||         |||||||||||||| ||||||||||||||||| | ||| | ||||    
T  30900054 gaaaatagtggtttgctcaaattccgctatgtaacagtactatagcaccgcgatagccactatttcacaatattttgtactaaatagtgtatcgctgaac 30900153  T
Q  322 aatagcactttgttcaaattccgctaagcaatagc 356  Q
    ||||||  || ||||||||||||||| ||||||||    
T  30900154 aatagcgattcgttcaaattccgctatgcaatagc 30900188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 28727016 - 28726955
Alignment:
Q  232 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattatt 295  Q
    ||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||| ||||    
T  28727016 aaaatagcggtttgttcaaattccgctatgcaacagtgccata--gccactatttcacaatatt 28726955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 2898956 - 2898879
Alignment:
Q  277 gccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaata 354  Q
    |||||||||||||| ||||||| | ||||||||| |||||||||||||||   |||||  ||||||||||| ||||||    
T  2898956 gccactatttcacaatattttgcattaaatagcgtatcacggaacaatagtgatttgtcgaaattccgctaggcaata 2898879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 232 - 345
Target Start/End: Complemental strand, 42114974 - 42114861
Alignment:
Q  232 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactt 331  Q
    |||||||| ||||||||||||||| || |||||||  | ||||||||| |||||| ||| |||||  |||| ||||||| ||   |||||||||||  ||    
T  42114974 aaaatagcagtttgttcaaattccactgtgcaacatggctatagcgccgctatttgacaatatttactactgaatagcgtattgtggaacaatagcgatt 42114875  T
Q  332 tgttcaaattccgc 345  Q
    || |||||||||||    
T  42114874 tgatcaaattccgc 42114861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 356
Target Start/End: Original strand, 23117299 - 23117435
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgc---------cactatttcacattattttgtactaaatagcgaatcacgga 319  Q
    |||||||||| |||||||||||||||||||| |  |||||| ||||||||         ||||||||||||  ||||||| |||||||||  |||| |||    
T  23117299 cggaaaatagtggtttgttcaaattccgctacgtgacagtgctatagcgctgctatacccactatttcacaacattttgtgctaaatagcatatcatgga 23117398  T
Q  320 acaatagcactttgttcaaattccgctaagcaatagc 356  Q
    | ||||||  ||||||||||||| ||||  |||||||    
T  23117399 aaaatagcgatttgttcaaattctgctattcaatagc 23117435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 31809190 - 31809136
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccacta 283  Q
    ||||||| ||||||||| ||||||||||||| ||||||||| ||||| |||||||    
T  31809190 cggaaaacagcggtttgatcaaattccgctacgcaacagtgctatagtgccacta 31809136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 32736037 - 32736087
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatag 275  Q
    ||||||| ||||||||||||||||||||||||||| |||||| || |||||    
T  32736037 atcacgggaaatagcggtttgttcaaattccgctacgcaacactgctatag 32736087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 48517386 - 48517440
Alignment:
Q  230 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 284  Q
    |||||||||||||||||||||||| |||||| ||||| || ||||||||| ||||    
T  48517386 ggaaaatagcggtttgttcaaatttcgctatacaacattgctatagcgccgctat 48517440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 1668351 - 1668388
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgc 262  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1668351 atcacggaaaatagcggtttgttcaaattccactatgc 1668388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 3593037 - 3593089
Alignment:
Q  232 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 284  Q
    |||||||||||  |||||||||||||||||| ||||||||| ||||| |||||    
T  3593037 aaaatagcggtcagttcaaattccgctatgctacagtgttacagcgcaactat 3593089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 21173837 - 21173881
Alignment:
Q  230 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttata 274  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  21173837 ggaaaatagcggattgttcaaattccactatgcaactgtgttata 21173881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 24673360 - 24673404
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtg 269  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||||    
T  24673360 atcacagaaaatagtggtttgttcaaattcagctatgcaacagtg 24673404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 364
Target Start/End: Complemental strand, 9336467 - 9336384
Alignment:
Q  281 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagccgttattt 364  Q
    ||||||| || || ||||||| | |||||| ||||| ||||||||||  |||||||||||||  ||| |||||||||| |||||    
T  9336467 ctatttcgcagtaatttgtaccatatagcgtatcacagaacaatagcggtttgttcaaattctactatgcaatagccgctattt 9336384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 33711010 - 33710955
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactattt 286  Q
    |||| |||| |||| ||||||||| |||||| ||||||||||||||||| ||||||    
T  33711010 gaaagtagccgtttcttcaaattcggctatgtaacagtgttatagcgccgctattt 33710955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 481105 - 481075
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattcc 255  Q
    |||||||||||||||||||||||||||||||    
T  481105 atcacggaaaatagcggtttgttcaaattcc 481075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 5627515 - 5627557
Alignment:
Q  233 aaatagcggtttgttcaaattccgctatgcaacagtgttatag 275  Q
    |||||||||||| |||||||||||||| ||||||||| |||||    
T  5627515 aaatagcggtttattcaaattccgctacgcaacagtgctatag 5627557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 6894350 - 6894400
Alignment:
Q  319 aacaatagcactttgttcaaattccgctaagcaatagccgttatttaacaa 369  Q
    |||||||||| |||||||||||||| ||| || ||||||| ||||||||||    
T  6894350 aacaatagcaatttgttcaaattccactacgctatagccgctatttaacaa 6894400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 22686055 - 22686120
Alignment:
Q  281 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgcta 347  Q
    |||||| ||| |||||||||||||| || | ||||||||||||||||| ||||  ||||||||||||    
T  22686055 ctatttaacaatattttgtactaaa-agagtatcacggaacaatagcaatttgaacaaattccgcta 22686120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 32612403 - 32612453
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccac 281  Q
    ||||||||||||||  |||||||||||||  |||||||| |||||||||||    
T  32612403 gaaaatagcggtttagtcaaattccgctacacaacagtgctatagcgccac 32612453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 28976554 - 28976599
Alignment:
Q  241 gtttgttcaaattccgctatgcaacagtgttatagcgccactattt 286  Q
    |||||||||||||||||||||||| || | |||||| |||||||||    
T  28976554 gtttgttcaaattccgctatgcaatagcgctatagcaccactattt 28976599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 356
Target Start/End: Original strand, 38622833 - 38622955
Alignment:
Q  232 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactt 331  Q
    |||||| | ||||||||||||| |||||| ||||| || ||||  ||| |||||| |||  ||||||| |||||||| | |||| ||||||||| |  ||    
T  38622833 aaaataacagtttgttcaaatttcgctatacaacaatgctata--gccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatt 38622930  T
Q  332 tgttcaaattccgctaagcaatagc 356  Q
    | ||||||||| |||| || |||||    
T  38622931 tattcaaattctgctacgctatagc 38622955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 17505048 - 17504954
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaata 325  Q
    ||||||||  |||||||||||||||||||  |||||||||||||| ||  |||||||||| ||||||| ||||||| ||  ||||| ||||||||    
T  17505048 gaaaatagttgtttgttcaaattccgctacacaacagtgttatagtgctgctatttcacaatattttgcactaaattgcatatcacagaacaata 17504954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 39597637 - 39597566
Alignment:
Q  281 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaa 352  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||||  ||| || ||||||||||| ||||    
T  39597637 ctatttcacaatattttgtactaaatagcgtatcgcggaacaatagcgatttatttaaattccgctacgcaa 39597566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 354
Target Start/End: Complemental strand, 1813594 - 1813467
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaat 324  Q
    |||||||||||||  ||||||||||||||||||||  |||||||| ||||   || ||| |||||| | || |||||||| ||| | |||| ||||||||    
T  1813594 atcacggaaaataatggtttgttcaaattccgctacacaacagtgctata--accgctacttcacaatgttctgtactaagtagtgtatcatggaacaat 1813497  T
Q  325 agcactttgttcaaattccgctaagcaata 354  Q
    |||  |||||||||| ||| || |||||||    
T  1813496 agcggtttgttcaaactccactgagcaata 1813467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 347
Target Start/End: Original strand, 16733727 - 16733777
Alignment:
Q  297 tgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgcta 347  Q
    |||||||||||||||||| | ||||||||||| ||| |||||||| |||||    
T  16733727 tgtactaaatagcgaatcgcagaacaatagcaatttattcaaatttcgcta 16733777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 11521815 - 11521860
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 276  Q
    ||||||||| |||||||||||||||||||||  |||||||| ||||    
T  11521815 gaaaatagctgtttgttcaaattccgctatgatacagtgttgtagc 11521860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 16866716 - 16866671
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 276  Q
    ||||||||||||| |||||||||| |||| ||||||||| ||||||    
T  16866716 gaaaatagcggttggttcaaattctgctacgcaacagtgctatagc 16866671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 38434232 - 38434183
Alignment:
Q  227 cacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 276  Q
    ||||||||||||| |||||||||||||| ||||||  |||||| ||||||    
T  38434232 cacggaaaatagcagtttgttcaaattctgctatgttacagtgctatagc 38434183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 44460379 - 44460330
Alignment:
Q  293 attttgtactaaatagcgaatcacggaacaatagcactttgttcaaattc 342  Q
    |||||||||||||||| | |||| |||||| ||||| |||||||||||||    
T  44460379 attttgtactaaatagtgtatcatggaacagtagcattttgttcaaattc 44460330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 1310190 - 1310115
Alignment:
Q  281 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagc 356  Q
    |||||||||| ||| ||||||||||||| | |||| |||||||||||| ||||||||||||| |||| | ||||||    
T  1310190 ctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaattctgctacgaaatagc 1310115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 9112519 - 9112433
Alignment:
Q  240 ggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatag 326  Q
    |||||||| ||||||| |||||||| | || | |||||||||||||||||| |||| |||||||||||||  ||| | |||||||||    
T  9112519 ggtttgtttaaattccactatgcaatattgctgtagcgccactatttcacaatattctgtactaaatagcatatcgcagaacaatag 9112433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 43935150 - 43935224
Alignment:
Q  281 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatag 355  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||||   |||||||||||||| ||| |||||||    
T  43935150 ctatttcacaatattttgtgctaaacagcgtatcacggaacaatagtcatttgttcaaattccactatgcaatag 43935224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 42822706 - 42822651
Alignment:
Q  229 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 284  Q
    ||||||||| | ||||||||||||||| ||||||||||||| ||||||||| ||||    
T  42822706 cggaaaatatcagtttgttcaaattccactatgcaacagtgctatagcgccgctat 42822651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 42822932 - 42822860
Alignment:
Q  230 ggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaa 304  Q
    |||||||||| ||| ||||||||||| ||||||| |||||  |||||  |||||||||||| |||||||||||||    
T  42822932 ggaaaatagcagttggttcaaattccactatgcagcagtgccatagc--cactatttcacagtattttgtactaa 42822860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 41686218 - 41686271
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 284  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||| |||| ||||    
T  41686218 gaaaagagcggtttgttcaaatttcgctatgcaacagtgctataacgccgctat 41686271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 16900879 - 16900939
Alignment:
Q  225 atcacggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatt 285  Q
    ||||||||||||||||||||| |||||||| |||| |||  |||| ||||||||| |||||    
T  16900879 atcacggaaaatagcggtttgctcaaattctgctacgcacgagtgctatagcgccgctatt 16900939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 18899939 - 18900017
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagc 309  Q
    ||||||||  |||||||||||||||||||  |||||||| ||||  ||| |||||| |||  |||||||| ||||||||    
T  18899939 gaaaatagtagtttgttcaaattccgctacacaacagtgctatattgcctctatttgacaacattttgtaataaatagc 18900017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 347
Target Start/End: Complemental strand, 12138270 - 12138165
Alignment:
Q  242 tttgttcaaattccgctatgcaacagtgttatagcgccactatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaatt 341  Q
    |||||||||||||| | ||||||| ||| ||||| ||| || ||| |||  |||||||||||||||  | || | || ||||||||| |||||||| ||     
T  12138270 tttgttcaaattccacaatgcaactgtgctatagtgccgcttttttacaccattttgtactaaatattgtattatgggacaatagcaatttgttcagatc 12138171  T
Q  342 ccgcta 347  Q
    ||||||    
T  12138170 ccgcta 12138165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 10620 - 10663
Alignment:
Q  231 gaaaatagcggtttgttcaaattccgctatgcaacagtgttata 274  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  10620 gaaaatagcggtttgttcaaattctgctatgcaacagtattata 10663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 50868 - 50793
Alignment:
Q  281 ctatttcacattattttgtactaaatagcgaatcacggaacaatagcactttgttcaaattccgctaagcaatagc 356  Q
    |||||||||| ||| ||| ||||||||| | ||  ||||||||| ||| ||||||||||||| |||||||||||||    
T  50868 ctatttcacaatatcttgaactaaatagtgtatttcggaacaattgcaatttgttcaaattctgctaagcaatagc 50793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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