View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218-INSERTION8 (Length: 271)
Name: NF0218-INSERTION8
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218-INSERTION8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 18924552 - 18924809
Alignment:
| Q |
7 |
aagtttgagctgaagccaccgccttatccgttggtaatatctaaattctgtccaatattctgtttgttattctttttatcaaccatgccaatggaattgg |
106 |
Q |
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| T |
18924552 |
aagtttgagctgaagccaccaccttatccgttggtaatatctaaattctgttta----tctgtttgttatgctttttatcaaccatgccaatggaattgg |
18924647 |
T |
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| Q |
107 |
ctttatcattttcaaacttcaatttttgccgaactttggtttgtaatctttcatcattgttagagactggtgaaaagaaagagattcattagctcgttat |
206 |
Q |
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| T |
18924648 |
ctttatcgttttcaaacttcaatttttgccgaacttaggtttgtaatctttcatcatt---agagactggtgaaaagaaagagattcattagctcgttat |
18924744 |
T |
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| Q |
207 |
tttgttcgaattggtgaaatgatggaatccatgttaaaacataattgaggtaactaagagtttta |
271 |
Q |
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| T |
18924745 |
ttagttcgaattggtgaaatgatggaatccatgttaaaacataattgaggtaactaagagtttta |
18924809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 14540868 - 14540927
Alignment:
| Q |
179 |
aaaagaaagagattcattagctcgttattttgttcgaattggtgaaatgatggaatccat |
238 |
Q |
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| T |
14540868 |
aaaagaaggagattcattagctcgttatttagttcgaattggtgaaatgatggaatccat |
14540927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 504371 - 504430
Alignment:
| Q |
179 |
aaaagaaagagattcattagctcgttattttgttcgaattggtgaaatgatggaatccat |
238 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
504371 |
aaaagaaggagattcattagctcgttatttagttcgaattggtgaaatgatggaatccat |
504430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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