View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218-INSERTION9 (Length: 439)
Name: NF0218-INSERTION9
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218-INSERTION9 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 36965241 - 36964853
Alignment:
| Q |
11 |
attcctttggtagcctcataaatctccacatgttgttattatccagcaacaatctatcagaaaaaattccaaactctctaataaattgtcagtttttgac |
110 |
Q |
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| T |
36965241 |
attcctttggtaacctcataaatctccacatgttgataatgtacaacaataatctctctggaggaattccagagacactaaaaaattgtcaagtgatgac |
36965142 |
T |
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| Q |
111 |
cattttggatttagggtcgaatcaattaagggggtccataccatattggattggtacagacatgcaaatcttaaaggcacttatattgggcaagaattct |
210 |
Q |
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| T |
36965141 |
tttattggatttacagtcgaatcgattaagggggcccataccatattggattggtacagacatgcaaatcctagaggcacttatattgggaaggaattcc |
36965042 |
T |
|
| Q |
211 |
tttgatggaaatatcccaacaactttatgcctacttaagtctctacatatattagatctttctgacaatcaattgacgggaccaattccaagatgtgtct |
310 |
Q |
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| T |
36965041 |
tttgatgaaaatatcccaacaaatttatgcctacttaagtctctacatatattagatctttctgacaatcaattgacgggaccaattccaagatgtgtct |
36964942 |
T |
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| Q |
311 |
tccctgcaatggctaccgaagaaagtgtaaatgaaaagtcctatatggagtttcttacaattgaggaaagtctttcgatctatctatct |
399 |
Q |
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| T |
36964941 |
tccctgcaatggctaccgaagaaagtgtaaatgaaaagtcctatatggagtttcttacaattgaggaaagtctttcgatctatctatct |
36964853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 36976980 - 36976603
Alignment:
| Q |
11 |
attcctttggtagcctcataaatctccacatgttgttattatccagcaacaatctatcagaaaaaattccaaactctctaataaattgtcagtttttgac |
110 |
Q |
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| T |
36976980 |
attcctttggtaacctcataaatctccacatgttgataatgtacaacaataatctctctggaagaattccagagacactaaaaaattgtcaagtgatgac |
36976881 |
T |
|
| Q |
111 |
cattttggatttagggtcgaatcaattaagggggtccataccatattggattggtacagaca--tgcaaatcttaaaggcacttatattgggcaagaatt |
208 |
Q |
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| T |
36976880 |
tttattggatttacagtcgaatcgattaagggggcctataccatattggattggtactgacacatgcaaatcttagaggcacttatattgcgtaggaact |
36976781 |
T |
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| Q |
209 |
cttttgatggaaatatcccaacaactttatgcctacttaagtctctacatatattagatctttctgacaatcaattgacgggaccaattccaagatgtgt |
308 |
Q |
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| T |
36976780 |
cctttgaagaaaatatccctaaaacgttatgcctactcaagtctttaaagatattagatctttcagagaatcaattaaggggagagataccaagatgtgt |
36976681 |
T |
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| Q |
309 |
cttccctgcaatggctaccgaagaaagtgtaaatgaaaagtcctatatggagtttcttacaattgaggaaagtctttc |
386 |
Q |
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| T |
36976680 |
cttccctgcaatggctactgaggaaagtataaatgaaaaatcatatatggagtttcttacgattaaggaaagtctttc |
36976603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 130 - 399
Target Start/End: Original strand, 5868210 - 5868479
Alignment:
| Q |
130 |
aatcaattaagggggtccataccatattggattggtacagacatgcaaatcttaaaggcacttatattgggcaagaattcttttgatggaaatatcccaa |
229 |
Q |
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|||| |||||| ||| ||||||||||||||||||| |||||||| |||||| ||| || ||| |||||||| || ||||| ||||||| ||||||||||| |
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| T |
5868210 |
aatcgattaagagggcccataccatattggattggcacagacatacaaatcctaatggtactcatattgggtaataattcctttgatgaaaatatcccaa |
5868309 |
T |
|
| Q |
230 |
caactttatgcctacttaagtctctacatatattagatctttctgacaatcaattgacgggaccaattccaagatgtgtcttccctgcaatggctaccga |
329 |
Q |
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| T |
5868310 |
agactttatgccaacttaagtctctgcatatattagatctttccgagaatcaattgacgggtgcaattccaagatgtgtcttccttgcactgactactga |
5868409 |
T |
|
| Q |
330 |
agaaagtgtaaatgaaaagtcctatatggagtttcttacaattgaggaaagtctttcgatctatctatct |
399 |
Q |
| |
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||||||| |||||||||| || |||||||||||| | |||||||||||||||||| |||||||||||||| |
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| T |
5868410 |
agaaagtataaatgaaaaatcatatatggagtttatgacaattgaggaaagtcttccgatctatctatct |
5868479 |
T |
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