View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_high_1 (Length: 721)
Name: NF0218_high_1
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 80 - 653
Target Start/End: Complemental strand, 655874 - 655301
Alignment:
| Q |
80 |
ttgcttgaaacactagcaccaatgaattgaagaattgtttttagtgacttctaatgaagcgtaaaatcttgtatatttttctttaagagatctcagctgc |
179 |
Q |
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| T |
655874 |
ttgcttgaagcactagcaccaatgaattgaagaattgtttttagtgacttctaatgaagcataaaatcttgtatatttttctttaagagatctcagctgc |
655775 |
T |
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| Q |
180 |
atggttgtatgcttcaggcttcatttttgtatgtgatagtctgatagagcttcaagaaaatcttgtatattctactttatagttagttcattcctgtcat |
279 |
Q |
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| T |
655774 |
atggttgtatgcttcaggcttcatttttgtatgtgatagtctgatagagcttcaagaaaatcttgtatattctactttatagttagttcattcctgtcat |
655675 |
T |
|
| Q |
280 |
aatccagtttgatataagttcttaaaattctttatggatggataatgaagcattctatatggagataaatagcattgtttacttcttttgtagggtactg |
379 |
Q |
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| T |
655674 |
aatccagtttgatataagttcttaaaattctttatggatggataatgaagcattctatatggagataaatagcattgtttacttcttttgtagggtactg |
655575 |
T |
|
| Q |
380 |
cgtcatttcttctaggcctctttttcatttttgtgaggtggccaatagttggtataatacttgaaatatacggttgtgttttcctcttcaggttagttga |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655574 |
cgtcatttcttctaggcctctttttcatttttgtgaggtggccaatagttggtataatacttgaaatatacggttgtgttttcctcttcaggttagttga |
655475 |
T |
|
| Q |
480 |
ttccttgacggcttcttgaagtctctactatattnnnnnnnttatcattatacacttatcattgatgcttttggttgcagtggtttttggtcatctgtca |
579 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
655474 |
ttccttgacggcttcttgaagtctctactatattaaaaaaattatcattatacgcttatcattgatgcttttggttgcagtggtttttggtcatctgtca |
655375 |
T |
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| Q |
580 |
aagtgttcctctaccatatcccagttgttggatgggttatacgatttattgcacgtaagtttttgctatagaaa |
653 |
Q |
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| T |
655374 |
aagtgttcctctaccatatcccagttgttggatgggttatacggtttattgcacgtaagtttttgctatagaaa |
655301 |
T |
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