View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_high_11 (Length: 455)
Name: NF0218_high_11
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 28525915 - 28526350
Alignment:
| Q |
1 |
ttctggcttatctctctggttttattacttgatatagtctccttagatattcttgttgttttctaatttaattttttcagatattatctcttccatatat |
100 |
Q |
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| T |
28525915 |
ttctgtcttatctctctggttttattacttgatatagcatccttagatattcttgttgttttctaatttcattttttcagatattatctcttccatatat |
28526014 |
T |
|
| Q |
101 |
aaatacatacaatctcatctttacctnnnnnnnnngtaatctgtacaatatcattgtatattttcaatataattcagaaaatttcaggctggtaatagag |
200 |
Q |
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| T |
28526015 |
aaatacatacaatctcatctttacccaaaaaaaaagtaatctgtacaatatcattgtatattttcaatataattcagaaaatttcaggctggtactagag |
28526114 |
T |
|
| Q |
201 |
ctttctggttgaccccctttcagttttcttcttcctcaagtgttgtcagtttttaggtgttcagtcgttttgaatttggacagtagattaatacaagatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28526115 |
ctttctggttgaccccctttcagttttcttcttcctcaagtgttgtcagtttttaggtgttcagtcgttttgaatttggacagtagaataatacaagatt |
28526214 |
T |
|
| Q |
301 |
attcaatctttattatccgtccatttgccttagatcccactgacagccatccctacaagcaccatcactagagcaagttttatttttggattctacaatg |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
28526215 |
attcaatctttattatccctccatttgccttagatcccactgacagccatccctacaagcaccatcaccagagcatgttttatttttggattctacaatg |
28526314 |
T |
|
| Q |
401 |
ctctcattacttggattggtgcgtgtttgatgatgt |
436 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
28526315 |
ctctcattacttggattggtgcgtgtttgatgatgt |
28526350 |
T |
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