View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_high_13 (Length: 453)
Name: NF0218_high_13
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 220 - 438
Target Start/End: Complemental strand, 297979 - 297764
Alignment:
| Q |
220 |
gtcctcatgctaattatatatgctagtgcctgcgattgcgaaggttgttgttggcagtgacatgagcagcagtgttgttgttagagacgaggggctggaa |
319 |
Q |
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| T |
297979 |
gtcctcatgataattatatatgctagtgcctgcgattgcgaaggttgttgttggcagtgacatgagcagcagtgttgtttttagagacgaggggctggaa |
297880 |
T |
|
| Q |
320 |
atgatgatcagattcgcgagttcttctgcgaaaggaaccattatcaggtcccaatagcaaacactttgagctatcttctaaatgttgtaataaggtgttc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
297879 |
atgatgatcagattcgcgagttcttctgcgaaaggaaccattatcaggtcccaatagcaaacactttgagcta---tctgaatgttgtaataaggtgtta |
297783 |
T |
|
| Q |
420 |
atgtgctcaaacttttgct |
438 |
Q |
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||||||||||||||||||| |
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| T |
297782 |
atgtgctcaaacttttgct |
297764 |
T |
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