View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_high_15 (Length: 437)
Name: NF0218_high_15
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_15 |
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| [»] scaffold0652 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 26 - 427
Target Start/End: Complemental strand, 30037177 - 30036786
Alignment:
| Q |
26 |
atcaaaggagatgcaagagtgatgttcagaatccagaggctgcaaaaaggaaggtatgatgattatgtacaaaatgtgattatttatactctctgattat |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30037177 |
atcaaaggagatgcaagagtgatgttcagaatccagaggctgcaaaaaggaaggtatgatgattatgtacaaaatgtgattaattatactctctgattat |
30037078 |
T |
|
| Q |
126 |
gtacaaaatcctaacttatgcctttttatgtttgttaatgttgtagaggaaaacacctagaaggaagaacacttcaactgcagctacaactggtactgaa |
225 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| |
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| T |
30037077 |
gtacaaaatcctaacttatgcctttttatgtttgttaatgttgtagaggaaaacacctagaag----------tcaattgcagctacaactgctactgaa |
30036988 |
T |
|
| Q |
226 |
ccaatgcagactgaaccaattcagactgacccaatgcaagctgaagatgcagctggtactgaaccaatgcagcctgaagttgaagctggtacacaaccaa |
325 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30036987 |
ccaatgcagactgaaccaattcagaccgacccaatgcacactgaagttgcagctggtactgaaccaatgcagcctgaagttgaagctggtacacaaccaa |
30036888 |
T |
|
| Q |
326 |
tgcacactgcatctactcaaggtccaccaaggcacaccacaaaaattgtaaaagtgaaaaactctgaagctcctttcaagatacaaaaagtagtcatctc |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30036887 |
tgcacactgcatctactcaaggtccaccaaggcacaccacaaaaattgtaaaagtgaaaaactctgaagctcctttcaagatacaaaaagtagtcacctc |
30036788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0652 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: scaffold0652
Description:
Target: scaffold0652; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 26 - 421
Target Start/End: Complemental strand, 8235 - 7855
Alignment:
| Q |
26 |
atcaaaggagatgcaagagtgatgttcagaatccagaggctgcaaaaaggaaggtatgatgattatgtacaaaatgtgattatttatactctctgattat |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8235 |
atcaaaggagatgcaagagtgatgttcagaattcagaggctgcaaaaaggaaggtatgatgattatgtacaaaatgtgattaattatactctctgattat |
8136 |
T |
|
| Q |
126 |
gtacaaaatcctaacttatgcctttttatgtttgttaatgttgtagaggaaaacacctagaaggaagaacacttcaactgcagctacaactggtactgaa |
225 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8135 |
gtacaaaatcctaacttatgcctttttatgtttgttaatgttgtagaggaaaacacctagaaggaagaacacttcaactgcagctacaactgctactgaa |
8036 |
T |
|
| Q |
226 |
ccaatgcagactgaaccaattcagactgacccaatgcaagctgaagatgcagctggtactgaaccaatgcagcctgaagttgaagctggtacacaaccaa |
325 |
Q |
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||||||||||||||| | ||||||| ||| || || ||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
8035 |
ccaatgcagactgaa---------------caaatgcaaactgcagttgaagctggtactgaaccaatgcacactgaagttgaagctggtacagaaccaa |
7951 |
T |
|
| Q |
326 |
tgcacactgcatctactcaaggtccaccaaggcacaccacaaaaattgtaaaagtgaaaaactctgaagctcctttcaagatacaaaaagtagtca |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7950 |
tgcacactgcatctactcaaggtccaccaaggcacaccacaaaaattgtaaaagtgacaaactctgaagctcctttcaagatacaaaaagtagtca |
7855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 26 - 334
Target Start/End: Complemental strand, 3920215 - 3919922
Alignment:
| Q |
26 |
atcaaaggagatgcaagagtgatgttcagaatccagaggctgcaaaaaggaaggtatgatgattatgtacaaaatgtgattatttatactctctgattat |
125 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3920215 |
atcaaaggagatgcaagagtgatgttcagaatacagaggctgcaaaaaggaaggtatgatgattatgtacaaaatgtgattaattatactctctgattat |
3920116 |
T |
|
| Q |
126 |
gtacaaaatcctaacttatgcctttttatgtttgttaatgttgtagaggaaaacacctagaaggaagaacacttcaactgcagctacaactggtactgaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3920115 |
gtacaaaatcctaacttatgcctttttatgtttgttaatgttgtagaggaaaacacctagaaggaagaacacttcaactgcagctacaactgctactgaa |
3920016 |
T |
|
| Q |
226 |
ccaatgcagactgaaccaattcagactgacccaatgcaagctgaagatgcagctggtactgaaccaatgcagcctgaagttgaagctggtacacaaccaa |
325 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| |||| |||||| |
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| T |
3920015 |
ccaatgcaga---------------ctgacccaatgcaagctgaagttgcagctgctactgaaccaatgcaagctgaagttgaagctagtactgaaccaa |
3919931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 218 - 427
Target Start/End: Complemental strand, 3919942 - 3919733
Alignment:
| Q |
218 |
gtactgaaccaatgcagactgaaccaattcagactgacccaatgcaagctgaagatgcagctggtactgaaccaatgcagcctgaagttgaagctggtac |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3919942 |
gtactgaaccaatgcaaactgaaccaattcagactgacccaatgcaggctgaagttgcagctggtactgaaccaatgcaagctgaagttgaagctggtac |
3919843 |
T |
|
| Q |
318 |
acaaccaatgcacactgcatctactcaaggtccaccaaggcacaccacaaaaattgtaaaagtgaaaaactctgaagctcctttcaagatacaaaaagta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3919842 |
acaaccaatgcacactgcatctactcaaggtccaccaaggcacaccacaaaaattgtaaaagtgaaaaactctgaagctcctttcaagatacaaaaagta |
3919743 |
T |
|
| Q |
418 |
gtcatctctg |
427 |
Q |
| |
|
|||| ||||| |
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|
| T |
3919742 |
gtcacctctg |
3919733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 26 - 334
Target Start/End: Original strand, 29879393 - 29879674
Alignment:
| Q |
26 |
atcaaaggagatgcaagagtgatgttcagaatccagaggctgcaaaaaggaaggtatgatgattatgtacaaaatgtgattatttatactctctgattat |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
29879393 |
atcaaaggagatgcaagagtgatgttcagaatccagaggctgcaaaaaggaaggtatgatgattatgtacaaaatgtgattaattatactctctgattat |
29879492 |
T |
|
| Q |
126 |
gtacaaaatcctaacttatgcctttttatgtttgttaatgttgtagaggaaaacacctagaaggaagaacacttcaactgcagctacaactggtactgaa |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
29879493 |
gtacaaaatcctaacttatgcctttttatgtttgttaatgttgtagaggaaaacacctagaaggaagaacacttcaactgc------------tactgaa |
29879580 |
T |
|
| Q |
226 |
ccaatgcagactgaaccaattcagactgacccaatgcaagctgaagatgcagctggtactgaaccaatgcagcctgaagttgaagctggtacacaaccaa |
325 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
29879581 |
ccaatgc---------------agactgacccaatgcaagctgaagttgcagctgctactgaaccaatgcaagctgaagttgaagctggtactgaaccaa |
29879665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 256 - 427
Target Start/End: Original strand, 29879725 - 29879896
Alignment:
| Q |
256 |
ccaatgcaagctgaagatgcagctggtactgaaccaatgcagcctgaagttgaagctggtacacaaccaatgcacactgcatctactcaaggtccaccaa |
355 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29879725 |
ccaatgcaagctgaagttgaagctggtactgaaccaatgcagcctgaagttgaagctggtacacaaccaatgcacactgcatctactcaagatccaccaa |
29879824 |
T |
|
| Q |
356 |
ggcacaccacaaaaattgtaaaagtgaaaaactctgaagctcctttcaagatacaaaaagtagtcatctctg |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
29879825 |
ggcacaccacaaaaattgtaaaagtgaaaaactctgaagctcctttcaagatacaaaaagtagtcacctctg |
29879896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 215 - 329
Target Start/End: Original strand, 29879651 - 29879765
Alignment:
| Q |
215 |
ctggtactgaaccaatgcagactgaaccaattcagactgacccaatgcaagctgaagatgcagctggtactgaaccaatgcagcctgaagttgaagctgg |
314 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |||||||||||||||| |
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|
| T |
29879651 |
ctggtactgaaccaatgcaaactgaaccaattcagactgacccaatgcaggctgaagttgcagctggtactaaaccaatgcaagctgaagttgaagctgg |
29879750 |
T |
|
| Q |
315 |
tacacaaccaatgca |
329 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
29879751 |
tactgaaccaatgca |
29879765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 6870217 - 6870273
Alignment:
| Q |
26 |
atcaaaggagatgcaagagtgatgttcagaatccagaggctgcaaaaaggaaggtat |
82 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6870217 |
atcaaagaagatgcaagagtgctgttcagaatccagaggctgcaaaaaggaaggtat |
6870273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 6870333 - 6870374
Alignment:
| Q |
151 |
ttatgtttgttaatgttgtagaggaaaacacctagaaggaag |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
6870333 |
ttatgtttgtttatgttgtagaggaaaacaccaagaaggaag |
6870374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 36916461 - 36916517
Alignment:
| Q |
26 |
atcaaaggagatgcaagagtgatgttcagaatccagaggctgcaaaaaggaaggtat |
82 |
Q |
| |
|
|||| ||||||||||| |||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
36916461 |
atcagaggagatgcaatagtgctattcagaatccagaggctgcaaaaaggaaggtat |
36916517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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