View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0218_high_17 (Length: 421)
Name: NF0218_high_17
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 30 - 412
Target Start/End: Original strand, 41126438 - 41126820
Alignment:
| Q |
30 |
tccttctccgaaattcgcaagtgggtcttgcaaaccctcctcgaccgtcttaaattatcttcagaatccactgattcgatcaaagttgttgaccaccttc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41126438 |
tccttctccgaaattcgcaagtgggtcttgcaaaccctcctcgaccgtcttaaattatcttcagaatccactgattcgatcaaagttgttgaccaccttc |
41126537 |
T |
|
| Q |
130 |
aatatgcaatgttttgcttactcgtttttatgtgttttggtgaacgagttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41126538 |
aatatgcaatgttttgcttactcgtttttatgtgttttggtgaacgagttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgat |
41126637 |
T |
|
| Q |
230 |
aggtctcaacaaattcaacattttgaatatctttcccaaagtgactcggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41126638 |
aggtctcaacaaattcaacattttgaatatctttcccaaagtgactcggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaa |
41126737 |
T |
|
| Q |
330 |
gaagatgttctacttccgctaataagagcgaggaaggaagccaaggaaaggagattgagcaaaaacaatgttgtttcctatgc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41126738 |
gaagatgttctacttccgctaataagagcgaggaaggaagccaaggaaaggagattgagcaaaaacaatgttgtttcctatgc |
41126820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 132 - 365
Target Start/End: Original strand, 2350534 - 2350767
Alignment:
| Q |
132 |
tatgcaatgttttgcttactcgtttttatgtgttttggtgaacgagttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgatag |
231 |
Q |
| |
|
||||| ||||| || ||||| ||||| ||||||||||||||| ||||||||||||| |||||||| || || || | |||||||||| || ||||| | |
|
|
| T |
2350534 |
tatgctatgttctgtttacttgttttcatgtgttttggtgaaagagttaatgatgagaaaatcagtgatattgagcgtgtacaaaggacaattctgttga |
2350633 |
T |
|
| Q |
232 |
gtctcaacaaattcaacattttgaatatctttcccaaagtgactcggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaaga |
331 |
Q |
| |
|
|| | ||||||||||| || | ||| ||| || ||||| ||||||||||| || | ||||||||||| || ||||||||||| ||||| |||||||| |
|
|
| T |
2350634 |
gtgttaacaaattcaatataataaatttctggccaaaagttactcggattttgttttgcaaacgatgggaagagttgttgaagttacgaaaggatcaaga |
2350733 |
T |
|
| Q |
332 |
agatgttctacttccgctaataagagcgaggaag |
365 |
Q |
| |
|
||||||| | |||||||| || |||||||||||| |
|
|
| T |
2350734 |
agatgttttgcttccgctgattagagcgaggaag |
2350767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 141 - 365
Target Start/End: Original strand, 2330237 - 2330461
Alignment:
| Q |
141 |
ttttgcttactcgtttttatgtgttttggtgaacgagttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgataggtctcaaca |
240 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| ||||||| ||||| ||||| | ||| || || | |||||||||| | ||||| | | | | || |
|
|
| T |
2330237 |
ttttgtttacttgtttttatgtgttttggtgaaagagttaacgatgagaaaattaacgatattgagcgtgtacaaaggacgattctgttgaattttagca |
2330336 |
T |
|
| Q |
241 |
aattcaacattttgaatatctttcccaaagtgactcggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttct |
340 |
Q |
| |
|
||| || || ||||| ||| || ||||| || ||||||| || |||||||||||||| || ||| |||||||| |||||||||||||||||||| |
|
|
| T |
2330337 |
gatttaatatactgaatttctggccgaaagttacaaggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttct |
2330436 |
T |
|
| Q |
341 |
acttccgctaataagagcgaggaag |
365 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
2330437 |
gcttccgctgataagagcgaggaag |
2330461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 132 - 364
Target Start/End: Original strand, 2302958 - 2303190
Alignment:
| Q |
132 |
tatgcaatgttttgcttactcgtttttatgtgttttggtgaacgagttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgatag |
231 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||||||||||||| ||||||| ||||| || ||||| || || || | ||| |||| | || || || || |
|
|
| T |
2302958 |
tatgctatgtttagcttacttgtttttatgtgttttggtgaaagagttaacgatgagaatatcagtgatattgagcgtgtgcaaatgacaattatgttaa |
2303057 |
T |
|
| Q |
232 |
gtctcaacaaattcaacattttgaatatctttcccaaagtgactcggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaaga |
331 |
Q |
| |
|
| || || |||||| || ||||| ||| || ||||| || ||||||| || ||||| |||||| |||| || |||||||| | || |||||||| |
|
|
| T |
2303058 |
atatcggcagattcaatatactgaatttctggccgaaagttacaaggattttgttgcgtaaccgatggaaggagtttttgaagttacttaaggatcaaga |
2303157 |
T |
|
| Q |
332 |
agatgttctacttccgctaataagagcgaggaa |
364 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
2303158 |
ggatgttctacttccgctgataagagcgaggaa |
2303190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 277 - 365
Target Start/End: Original strand, 2326658 - 2326746
Alignment:
| Q |
277 |
ggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaag |
365 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||| |||||| | |||||||||||||||| | |||||||| ||||||| ||||||| |
|
|
| T |
2326658 |
ggattttgttgcgtaaacaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttccgctgataagagggaggaag |
2326746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 365
Target Start/End: Original strand, 2320668 - 2320892
Alignment:
| Q |
141 |
ttttgcttactcgtttttatgtgttttggtgaacgagttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgataggtctcaaca |
240 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| ||||||| ||||| |||||||| || || || | |||||||||| || ||||| | | | | || |
|
|
| T |
2320668 |
ttttgtttacttgtttttatgtgttttggtgaaagagttaacgatgagaaaatcagtgatattgagcgtgtacaaaggacaattctgttgaatattagca |
2320767 |
T |
|
| Q |
241 |
aattcaacattttgaatatctttcccaaagtgactcggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttct |
340 |
Q |
| |
|
|||||| || ||||| | | || |||| || ||||||| || ||||| ||||||||||| || |||||||| | || |||||||| |||||||| |
|
|
| T |
2320768 |
gattcaatatactgaatttttggccgaaaggtacaaggattttgttgcgtaaccgatgggaggagtttttgaagttacttaaggatcaagaggatgttct |
2320867 |
T |
|
| Q |
341 |
acttccgctaataagagcgaggaag |
365 |
Q |
| |
|
|||||||| |||||||| |||||| |
|
|
| T |
2320868 |
gcttccgctgataagagcaaggaag |
2320892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 2293343 - 2293431
Alignment:
| Q |
130 |
aatatgcaatgttttgcttactcgtttttatgtgttttggtgaacgagttaatgatgataaaatcagcgacatcgaacttgtacaaagg |
218 |
Q |
| |
|
||||||| ||||| | ||||| ||||||||||||||||||||| ||||||| ||||| |||||||| || || || | |||||||||| |
|
|
| T |
2293343 |
aatatgctatgttctctttacttgtttttatgtgttttggtgaaagagttaacgatgagaaaatcagtgatattgagcgtgtacaaagg |
2293431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 2309674 - 2309762
Alignment:
| Q |
130 |
aatatgcaatgttttgcttactcgtttttatgtgttttggtgaacgagttaatgatgataaaatcagcgacatcgaacttgtacaaagg |
218 |
Q |
| |
|
||||||| ||||| | ||||| ||||||||||||||||||||| ||||||| ||||| |||||||| || || || | |||||||||| |
|
|
| T |
2309674 |
aatatgctatgttctctttacttgtttttatgtgttttggtgaaagagttaacgatgagaaaatcagtgatattgagcgtgtacaaagg |
2309762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 2326508 - 2326574
Alignment:
| Q |
127 |
ttcaatatgcaatgttttgcttactcgtttttatgtgttttggtgaacgagttaatgatgataaaat |
193 |
Q |
| |
|
|||| ||||| ||||| || ||||| ||||||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
2326508 |
ttcattatgctatgttctgtttacttgtttttatgtgttttggtgaaagagttaacgatgaaaaaat |
2326574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1890 times since January 2019
Visitors: 2394