View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0218_high_18 (Length: 416)

Name: NF0218_high_18
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0218_high_18
NF0218_high_18
[»] chr5 (16 HSPs)
chr5 (30-406)||(33904582-33904958)
chr5 (40-205)||(33763363-33763528)
chr5 (41-195)||(33734534-33734688)
chr5 (295-399)||(33867303-33867407)
chr5 (295-398)||(33736435-33736538)
chr5 (48-183)||(33867039-33867174)
chr5 (311-398)||(33698933-33699020)
chr5 (39-183)||(33749004-33749148)
chr5 (296-391)||(33763706-33763801)
chr5 (54-184)||(33698707-33698837)
chr5 (289-398)||(33823135-33823244)
chr5 (39-183)||(33821799-33821943)
chr5 (297-398)||(33680385-33680486)
chr5 (288-397)||(33750168-33750277)
chr5 (63-183)||(33680120-33680240)
chr5 (66-122)||(33846626-33846682)
[»] scaffold0001 (1 HSPs)
scaffold0001 (47-406)||(149000-149360)
[»] chr7 (2 HSPs)
chr7 (41-184)||(5470128-5470271)
chr7 (298-400)||(5468527-5468629)
[»] chr8 (2 HSPs)
chr8 (43-184)||(21306037-21306178)
chr8 (311-399)||(21306329-21306417)
[»] scaffold0247 (2 HSPs)
scaffold0247 (37-186)||(21871-22020)
scaffold0247 (288-396)||(19852-19960)
[»] scaffold0023 (2 HSPs)
scaffold0023 (63-186)||(90068-90191)
scaffold0023 (295-400)||(88887-88992)
[»] scaffold0193 (3 HSPs)
scaffold0193 (37-186)||(24286-24435)
scaffold0193 (288-396)||(23300-23408)
scaffold0193 (117-186)||(24882-24953)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 30 - 406
Target Start/End: Original strand, 33904582 - 33904958
Alignment:
Q  30 aacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggc 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33904582 aacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggg 33904681  T
Q  130 ttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagtagttatgcatggtannnnnnnn 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||            
T  33904682 ttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagcagttatgcatggtaattttttt 33904781  T
Q  230 gcatttgctttgatatatagttgttcaatttaactaattgtaagcctaaaataaacggcattcattatacctgctctttgtggaactaaatgccattttc 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904782 gcatttgctttgatatatagttgttcaatttaactaattgtaagcctaaaataaacggcattcattatacctgctctttgtggaactaaatgccattttc 33904881  T
Q  330 cttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctcacgtctctg 406  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  33904882 cttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctcacgcctctg 33904958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 33763363 - 33763528
Alignment:
Q  40 tggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatt 139  Q
    |||||| ||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763363 tggaagcttacctattacctagaagtttttgtaaccttaggatcagatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatt 33763462  T
Q  140 taaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaa 205  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||| || |||||||| ||| |||||    
T  33763463 taaccacctcaatctacaactttttcggcatctactcaatcctgccaagtgtaacaaatactttaa 33763528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 33734534 - 33734688
Alignment:
Q  41 ggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataattt 140  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  33734534 ggaagcttacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatcctcagcaaagctttcccttttgatgttagggcataaataattt 33734633  T
Q  141 aaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaaca 195  Q
    | ||||||||||||||| |||||||| || ||||||||||||| || ||||||||    
T  33734634 acccacctcaatctacaactttttcgacatctattcaatcctgccaagtgtaaca 33734688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 33867303 - 33867407
Alignment:
Q  295 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacctttt 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  33867303 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgcatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt 33867402  T
Q  395 ctcac 399  Q
    |||||    
T  33867403 ctcac 33867407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 33736435 - 33736538
Alignment:
Q  295 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacctttt 394  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33736435 tatacctgctctttgagaaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt 33736534  T
Q  395 ctca 398  Q
    ||||    
T  33736535 ctca 33736538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 33867039 - 33867174
Alignment:
Q  48 tacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacc 147  Q
    ||||| ||||||| ||| |||||||||||||  |||||||||||||||||||||| ||| || || || |||||| ||||| ||||||||||||||||||    
T  33867039 tacctgttccctaaaagcttgtgtaaccttaaaatcatatcaacttcatcctcagaaaaactctctctattgatggtggggtttaaataatttaaccacc 33867138  T
Q  148 tcaatctacagctttttcggcacctattcaatcctg 183  Q
    |||||||||| ||||| |||||||||||||||||||    
T  33867139 tcaatctacaacttttccggcacctattcaatcctg 33867174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 311 - 398
Target Start/End: Original strand, 33698933 - 33699020
Alignment:
Q  311 ggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctca 398  Q
    |||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33698933 ggaactaaatgccattttccttcaccatacttgtggatgcaagccttgagtagattatcttcctcatatgtccatgcaccttttctca 33699020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 33749004 - 33749148
Alignment:
Q  39 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataat 138  Q
    ||||||| |||||||||||| |  || ||||||||||| || ||||||||| |||||||||||| |||| |||| || |||||| | ||| |||||||||    
T  33749004 ttggaagcttacctattccccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatggttgggtttaaataat 33749103  T
Q  139 ttaaccacctcaatctacagctttttcggcacctattcaatcctg 183  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |||||    
T  33749104 ttaaccatctcaatctacaactttttctgcacctattcagtcctg 33749148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 391
Target Start/End: Original strand, 33763706 - 33763801
Alignment:
Q  296 atacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacct 391  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||| ||||||    
T  33763706 atacctgctctctgtggaacaaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacct 33763801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 33698707 - 33698837
Alignment:
Q  54 ttccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatc 153  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||| || || ||||| || |||||   |||| |||||||||| |||||||||||||    
T  33698707 ttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctcggcgaaactttctctgttgattgcggggtttaaataattcaaccacctcaatc 33698806  T
Q  154 tacagctttttcggcacctattcaatcctgt 184  Q
    |||| ||||| || ||||||||||| |||||    
T  33698807 tacaacttttccgacacctattcaaacctgt 33698837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 289 - 398
Target Start/End: Original strand, 33823135 - 33823244
Alignment:
Q  289 attcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgca 388  Q
    |||||||||||||| |||||  |||| ||||||||||||||||||||||||||| || ||  ||||||||||||  || |||||||||||||||||||||    
T  33823135 attcattatacctgttcttttgggaattaaatgccattttccttcaccatacttgtgaatgtaagccttgagtaagttgtcttcctcatatgtccatgca 33823234  T
Q  389 ccttttctca 398  Q
    ||||||||||    
T  33823235 ccttttctca 33823244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 33821799 - 33821943
Alignment:
Q  39 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataat 138  Q
    ||||||| |||||||||||| || || |||||||||||||  ||||||||| ||||||| || | || |||||| || || || || ||| |||||||||    
T  33821799 ttggaagcttacctattccccaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttaatattagggtttaaataat 33821898  T
Q  139 ttaaccacctcaatctacagctttttcggcacctattcaatcctg 183  Q
    ||| ||||||||||||||| |||||||| || |||||||||||||    
T  33821899 ttacccacctcaatctacaactttttcgacatctattcaatcctg 33821943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 398
Target Start/End: Original strand, 33680385 - 33680486
Alignment:
Q  297 tacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttct 396  Q
    ||||||||||||  ||||||||||||||||| ||||||||||| || || |||||  |||||||||| || || ||||||||||||||||||||||||||    
T  33680385 tacctgctcttttaggaactaaatgccatttcccttcaccatatttttgaatacagtccttgagtagattgtcctcctcatatgtccatgcaccttttct 33680484  T
Q  397 ca 398  Q
    ||    
T  33680485 ca 33680486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 397
Target Start/End: Original strand, 33750168 - 33750277
Alignment:
Q  288 cattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgc 387  Q
    |||||| ||||||||||||||  |||| ||||||||||||||||||||||||||| |  ||| |||| ||||||| ||| ||||||||| ||||||| |     
T  33750168 cattcactatacctgctcttttaggaattaaatgccattttccttcaccatacttgttaatataagctttgagtaacttgtcttcctcagatgtccacgt 33750267  T
Q  388 accttttctc 397  Q
    || |||||||    
T  33750268 acgttttctc 33750277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 33680120 - 33680240
Alignment:
Q  63 agtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatctacagcttt 162  Q
    |||||||||| |||||| |||||||||| |||||| |  |  || ||||| || |||||    ||| |||||||||| | ||||||||||||||| ||||    
T  33680120 agtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcagggtttaaataattcacccacctcaatctacaacttt 33680219  T
Q  163 ttcggcacctattcaatcctg 183  Q
    | ||||| |||||||| ||||    
T  33680220 tccggcatctattcaaacctg 33680240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 33846626 - 33846682
Alignment:
Q  66 ttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatg 122  Q
    ||||||||||| || ||||||||| |||||||||||| |||| |||| || ||||||    
T  33846626 ttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatg 33846682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 47 - 406
Target Start/End: Original strand, 149000 - 149360
Alignment:
Q  47 ttacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac 146  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  149000 ttacctattccctagaagtttgtgtaaccttaggatcatatcgacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac 149099  T
Q  147 ctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagtagttatgcatggtannnnnnnngcatttgctttg--ata 244  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||         |||||||||| |  |||    
T  149100 ctcaatctacagcttttgcggcacctattcaattctgtcatgtgtaacatataatttaagtaattatgcatggt-tattttttgcatttgcttcgatata 149198  T
Q  245 tatagttgttcaatttaactaattgtaagcctaaaataaacggcattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttct 344  Q
    |||||||||| | |||||||||||||| ||||| ||||||   |||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |    
T  149199 tatagttgttaagtttaactaattgtatgcctagaataaataacattcattttacctgctctttgaggaactaaatgccattttccttccccatacttgt 149298  T
Q  345 gtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctcacgtctctg 406  Q
      || |||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  149299 caatgcaagccttgagtagcttatcttcctcgtatgtccaggcaccttttctcacgcctctg 149360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 5470271 - 5470128
Alignment:
Q  41 ggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataattt 140  Q
    ||||| ||||||||| ||||  ||||||||||||||||| |||||||||||||||||||||| ||||||||  || |||||||||||  |||||||||||    
T  5470271 ggaagcttacctatttcctaagagtttgtgtaaccttaggatcatatcaacttcatcctcagaaaagctttttctattgatgttgggctttaaataattt 5470172  T
Q  141 aaccacctcaatctacagctttttcggcacctattcaatcctgt 184  Q
    | ||||||||||||||| |||||||| || ||||||||||||||    
T  5470171 atccacctcaatctacaactttttcgacatctattcaatcctgt 5470128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 400
Target Start/End: Complemental strand, 5468629 - 5468527
Alignment:
Q  298 acctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctc 397  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |  ||  ||||||||||||  || |||||||| |||||||||||||||||| ||    
T  5468629 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagttgtcttcctcgtatgtccatgcaccttttttc 5468530  T
Q  398 acg 400  Q
    |||    
T  5468529 acg 5468527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 21306037 - 21306178
Alignment:
Q  43 aagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaa 142  Q
    ||||||||||||| ||||| ||||||||||||||||| |||| |||  |||||||||||| ||| ||| | || ||||||||||||||||| ||||||||    
T  21306037 aagattacctatttcctagtagtttgtgtaaccttaggatcaaatcttcttcatcctcagaaaatcttcctctgttgatgttggggcttaagtaatttaa 21306136  T
Q  143 ccacctcaatctacagctttttcggcacctattcaatcctgt 184  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||    
T  21306137 ccacctcaatctacaactttttctgcatctattcaatcctgt 21306178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 399
Target Start/End: Original strand, 21306329 - 21306417
Alignment:
Q  311 ggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcaccttttctcac 399  Q
    |||||||||| ||||||||||||||| ||| | |  || |||||||||||||||| ||||||||  || |||||||| |||||||||||    
T  21306329 ggaactaaattccattttccttcaccgtacgtgttaatgcaagccttgagtagctcatcttccttgtaagtccatgcgccttttctcac 21306417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 22020 - 21871
Alignment:
Q  37 ccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaata 136  Q
    |||| |||| ||||||||| |||||||| |||||||||||||| |||| |||||||||||||| || |||  | ||||| ||||||| |||  |||||||    
T  22020 cctttgaagcttacctattgcctagaaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctccctgttgatgtagggatttaaata 21921  T
Q  137 atttaaccacctcaatctacagctttttcggcacctattcaatcctgtca 186  Q
    ||||| ||||||||||||||| |||||||| || ||||||||||||||||    
T  21920 atttacccacctcaatctacaactttttcgacatctattcaatcctgtca 21871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 396
Target Start/End: Complemental strand, 19960 - 19852
Alignment:
Q  288 cattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgc 387  Q
    ||||| ||||||||| |||||  |||| |||||||||||||||| |||||| |||  | ||  ||||||||||    || ||||| ||||||||||||||    
T  19960 cattctttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgc 19861  T
Q  388 accttttct 396  Q
    |||||||||    
T  19860 accttttct 19852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 186
Target Start/End: Complemental strand, 90191 - 90068
Alignment:
Q  63 agtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatctacagcttt 162  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||| |||||  | |||||| | ||| ||||||| || |||||||| |||||||| ||||    
T  90191 agtttttgtaaccttaggatcatatcaacttcatcctcagaaaatctttctttgttgatggttgggtttaaatagttaaaccaccttaatctacaacttt 90092  T
Q  163 ttcggcacctattcaatcctgtca 186  Q
    |||| |||||||| ||||||||||    
T  90091 ttcgacacctatttaatcctgtca 90068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 88992 - 88887
Alignment:
Q  295 tatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgcacctttt 394  Q
    ||||||||||||| | ||||||| |||||||||||||| ||||||||| |  || || ||||||||||  |||||||| ||||  ||||| | |||||||    
T  88992 tatacctgctcttcgaggaactagatgccattttccttgaccatacttgttaatgcatgccttgagtaagttatcttcttcattcgtccaggtacctttt 88893  T
Q  395 ctcacg 400  Q
     |||||    
T  88892 ttcacg 88887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 24435 - 24286
Alignment:
Q  37 ccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaata 136  Q
    ||||||| | ||||||||||||||| || |||||||||||||  || | |||| ||||||||| || ||||   ||||| |||||||  ||| |||||||    
T  24435 ccttggacgcttacctattccctaggaggttgtgtaaccttaaaattaaatcagcttcatccttagaaaagtcctccctgttgatgtaagggtttaaata 24336  T
Q  137 atttaaccacctcaatctacagctttttcggcacctattcaatcctgtca 186  Q
    ||||| ||| || |||||||| |||||||| |||||||||||||||||||    
T  24335 atttacccatcttaatctacaactttttcgacacctattcaatcctgtca 24286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 396
Target Start/End: Complemental strand, 23408 - 23300
Alignment:
Q  288 cattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttatcttcctcatatgtccatgc 387  Q
    ||||| ||||||||| |||||  |||| |||||||||||||||| |||||| |||  | ||  ||||||||||    || ||||| ||||||||||||||    
T  23408 cattcgttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgc 23309  T
Q  388 accttttct 396  Q
    |||||||||    
T  23308 accttttct 23300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 24953 - 24882
Alignment:
Q  117 ttgatgttggggcttaaataatttaac--cacctcaatctacagctttttcggcacctattcaatcctgtca 186  Q
    |||||| ||||| ||||||||||||||  ||||||| ||||||  ||| ||| ||||||||||||| |||||    
T  24953 ttgatggtggggtttaaataatttaaccacacctcagtctacaattttatcgacacctattcaatcatgtca 24882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2720 times since January 2019
Visitors: 2402