View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0218_high_21 (Length: 381)
Name: NF0218_high_21
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0218_high_21
[» ] chr7 (2 HSPs)
[» ] chr4 (3 HSPs)
Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 13042562 - 13042193
Alignment:
Q
12
agagaccacatatctgcagacgtgttgaaatgaagaggaacattgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaaga
111
Q
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13042562
agagaccacatatctgcagacgtgctgaaatgaagaggaacattgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaaga
13042463
T
Q
112
gatgaaatgtattttctgaagcgacctgacaagaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatg
211
Q
||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13042462
gatgaaatgaagtttctgaagcaacctgacaggaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatg
13042363
T
Q
212
catgagtctccaagtcatcaaagacttggaaggagggatatctgcagaccagatttgttttgcccaagagatattttggcctgcaccatatttgaacaaa
311
Q
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
T
13042362
catgagtctccaagtcatcaaagacttggaaggagggatgtctgcagaccagatttgttttgcccaagagatattttggcctgcgccatatttgaacaaa
13042263
T
Q
312
aacgcttctttgagagataggacccctgatgcgcagtgtttccaaaccaatatgtcctcctttggttcac
381
Q
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13042262
aaggcttctttgagagataggacccctgatgcgcagtgtttccaaaccaatatgtcctcctttggttcac
13042193
T
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HSP Overview ] [
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Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 579669 - 579581
Alignment:
Q
165
ttacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatc
253
Q
|||||||||||||| ||||||||||| || ||||| || || |||||||||||||||||||||||||| || ||||| ||||||||
T
579669
ttacaacctctaagagcaaggttatcatcggtagggagcttgttgtgcatgagtctccaagtcatcaaagattttgaaggtgggatatc
579581
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 38622207 - 38621859
Alignment:
Q
12
agagaccacatatctgcagacgtgttgaaatgaagaggaacattgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaaga
111
Q
||||||||||||||| |||| ||| ||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
T
38622207
agagaccacatatcttcagaagtgctgaaatgaataggtatattgaggagagaagctaaccaagaccacattttactagcaaaagggcattcaaaaaata
38622108
T
Q
112
gatgaaatgtattttctgaagcgacctgacaagaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatg
211
Q
|||| || | | |||||| | | ||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||||||||| |||||||||||
T
38622107
gatggaaggaagtttctgttgtagcttgacaggaagagcacattgaaggtaagttgcaacctctaagcattagattatcatctgttgcaagtttattatg
38622008
T
Q
212
catgagtctccaagtcatcaaagacttggaaggagggatatctgcagaccagatttgttttgcccaagagatattttggcctgcaccatatttgaacaaa
311
Q
|||||| ||||| |||||||| ||||| || || || ||||||||| |||| |||||||||||||| ||||||||||| | || ||||||||||||
T
38622007
catgagcctccaggtcatcaatgacttagaggggggaatatctgcacaccaaatttgttttgcccatgagatattttgtcttgtggcatatttgaacatg
38621908
T
Q
312
aacgcttctttgagagataggacccctgatgcgcagtgtttccaaacca
360
Q
|| |||||||||||||||| |||| |||||| ||||||||||| ||||
T
38621907
aaggcttctttgagagataaaacccttgatgcacagtgtttccatacca
38621859
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 23684410 - 23684322
Alignment:
Q
165
ttacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatc
253
Q
|||||||||||||| ||||||||||| | ||||| || || |||||| ||||||||||||||||||| || ||||| ||||||||
T
23684410
ttacaacctctaagagcaaggttatcatcggcagggagcttgttgtgcatgggtctccaagtcatcaaagattttgaaggtgggatatc
23684322
T
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Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 23850401 - 23850489
Alignment:
Q
165
ttacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatc
253
Q
|||||||||||||| ||||||||||| | ||||| || || |||||| ||||||||||||||||||| || ||||| ||||||||
T
23850401
ttacaacctctaagagcaaggttatcatcggcagggagcttgttgtgcatgggtctccaagtcatcaaagattttgaaggtgggatatc
23850489
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 9217033 - 9216665
Alignment:
Q
13
gagaccacatatctgcagacgtgttgaaatgaagaggaacattgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaagag
112
Q
||||||||||||||||||| ||| |||| ||||||||| ||||||||| ||||||| |||||||||||||||| ||||||| ||||||||| |||||
T
9217033
gagaccacatatctgcagaggtgctgaattgaagaggagtattgagaagggaagctagccaagaccacattttagtagcaaaattgcattcaaagaagag
9216934
T
Q
113
atgaaatgtattttctgaagcgacctgacaagaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatgc
212
Q
|||||| ||| ||||||||| | |||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||| |||||||| |||
T
9216933
atgaaaggtagtttctgaagaagcttgacaagatgagcacattgaaggtaaattacaacccctaagcattagattttcatctgttgatagtttattgtgc
9216834
T
Q
213
atgagtctccaagtcatcaaagacttggaaggagggatatctgcagaccagatttgttttgcccaagagatattttggcctgcaccatatttgaacaaaa
312
Q
||||| ||||||||||||||||||| || ||||| || |||| ||||||||||||| |||||||| | ||| || ||| |||||||||||||||||
T
9216833
atgagcttccaagtcatcaaagacttagagggaggtatgtctgtgcaccagatttgtttagcccaagaaacattctgccctaaaccatatttgaacaaaa
9216734
T
Q
313
acgcttctttgagagataggacccctgatgcgcagtgtttccaaaccaatatgtcctcctttggttcac
381
Q
| || ||||| | ||||| |||||||||| || |||||||||||||| | |||||||||| |||||
T
9216733
aggcgtctttaaaagataaagcccctgatgcacaatgtttccaaaccaaactatcctcctttgattcac
9216665
T
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HSP Overview ] [
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Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 35 - 328
Target Start/End: Complemental strand, 27448481 - 27448187
Alignment:
Q
35
gttgaaatgaagaggaacattgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaag-agatgaaatgtattttctgaagc
133
Q
|||||| |||||||| | ||||| |||||||||||||| ||||||| ||| ||||||| || ||||||||||| | |||||| || ||||||| |
T
27448481
gttgaactgaagaggcatgttgaggagagaagctaaccatgaccacaattttatagcaaatggacattcaaaaaaacaaatgaaaggtggtttctgagga
27448382
T
Q
134
gacctgacaagaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaa
233
Q
|||||||||| ||||||| ||||| | ||||| ||||| |||| |||||||||||| ||||| ||||| || |||||||||||||| |||| |||
T
27448381
agtctgacaagaaaagcacattgaaggaaggttacaccctctgagcactaggttatcatcagttggaagtttgttgtgcatgagtctccatgtcaataaa
27448282
T
Q
234
gacttggaaggagggatatctgcagaccagatttgttttgcccaagagatattttggcctgcaccatatttgaacaaaaacgcttctttgagaga
328
Q
|| || ||||| |||||||| | |||| | |||||||||||| |||||||| |||| ||||||||||| |||| || ||||| |||||
T
27448281
gattttgaaggtgggatatcagggcaccatagcgtttttgcccaagaaatattttgtcctgtgccatatttgaatgaaaaagcctctttaagaga
27448187
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 165 - 328
Target Start/End: Complemental strand, 48709862 - 48709699
Alignment:
Q
165
ttacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatctgcagaccaga
264
Q
|||||||||||||| ||||||||||| || ||||| || || |||||||||||||||||||||||||| || ||||| |||||||||| ||| |
T
48709862
ttacaacctctaagagcaaggttatcatcggtagggagcttgttgtgcatgagtctccaagtcatcaaagattttgaaggtgggatatctgggctccata
48709763
T
Q
265
tttgttttgcccaagagatattttggcctgcaccatatttgaacaaaaacgcttctttgagaga
328
Q
| || |||||||| ||||||||||| |||||||| ||||| | ||| ||||| || |||||
T
48709762
aatccttggcccaagaaatattttggccagcaccatacttgaatagaaaagcttccttaagaga
48709699
T
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HSP Overview ] [
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Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 14775696 - 14775896
Alignment:
Q
53
attgagaagagaagctaaccaagaccacattttactagcaaaggggcattcaaaaaagagatgaaatgtattttctgaagcgacctgacaagaagagcac
152
Q
|||||||||||| |||| ||||||||||||||| |||||| | |||||||||||| | |||||| || |||| | ||||||| || || |||
T
14775696
attgagaagagatgctagccaagaccacattttggaagcaaaagtgcattcaaaaaataaatgaaaagtggtttcctcataagcctgacaggatgaacac
14775795
T
Q
153
atagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatat
252
Q
|| || || | |||||||||||||| ||||||||||| || ||||| || || |||||||||||||||||||||||||| || ||||| |||||||
T
14775796
attgaggggaggttacaacctctaagagcaaggttatcatcggtagggagcttgttgtgcatgagtctccaagtcatcaaagattttgaaggtgggatat
14775895
T
Q
253
c
253
Q
|
T
14775896
c
14775896
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 11305548 - 11305460
Alignment:
Q
165
ttacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatc
253
Q
|||||||||||||| ||||||||||| || ||||| || || |||||||||||||||||||| ||||| || ||||| ||||||||
T
11305548
ttacaacctctaagagcaaggttatcatcggtagggagcttgttgtgcatgagtctccaagtcattaaagattttgaaggtgggatatc
11305460
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 11966837 - 11966767
Alignment:
Q
183
aggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatc
253
Q
||||||||||| | ||||| || || |||||||||||||||||||||||||| || ||||| ||||||||
T
11966837
aggttatcatcggcagggagcttgttgtgcatgagtctccaagtcatcaaagattttgaaggtgggatatc
11966767
T
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Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 14098763 - 14098839
Alignment:
Q
189
tcatctgttgggagtttattatgcatgagtctccaagtcatcaaagacttggaaggagggatatctgcagaccagat
265
Q
||||||||||| || ||||||||||| || ||||| ||||| ||||| || |||||||||||||||||||||||
T
14098763
tcatctgttggaagcttattatgcataagcctccataccatcagggacttagatggagggatatctgcagaccagat
14098839
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 24771061 - 24770973
Alignment:
Q
150
cacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatcaaagactt
238
Q
|||||||||||||||| || |||||| |||||| ||||||||| || || |||||||| |||||| ||||||| |||||| |||||
T
24771061
cacatagaaggtaaatggcatcctctatgcattaagttatcatcagtaggaagtttatttagcatgaatctccaaaccatcaatgactt
24770973
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 41215118 - 41215212
Alignment:
Q
137
ctgacaagaagagcacatagaaggtaaattacaacctctaagcattaggttatcatctgttgggagtttattatgcatgagtctccaagtcatca
231
Q
||||||||| || | ||| ||||||||||| || ||||||||| | | |||||||| ||||| | |||||| || ||||| |||||||||||||
T
41215118
ctgacaagaggaacgcattgaaggtaaattgcagcctctaagcgtcaaattatcatcagttggtaatttattgtgtatgagcctccaagtcatca
41215212
T
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HSP Overview ] [
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Alignment Overview ]
© Oklahoma State University
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