View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0218_high_25 (Length: 365)
Name: NF0218_high_25
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 350
Target Start/End: Original strand, 40279891 - 40280235
Alignment:
| Q |
6 |
atttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaccgggtgca |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40279891 |
atttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaacgggtgca |
40279990 |
T |
|
| Q |
106 |
tgatcacacatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40279991 |
cgatcacacatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactt |
40280090 |
T |
|
| Q |
206 |
tgcattcaagagttccagagatagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttagaagtggcccatgggaatgg |
305 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40280091 |
tgcattcaagagttccagagatagtattgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttcgaagtggcccatgggaatgg |
40280190 |
T |
|
| Q |
306 |
cggtggaactgtcatgctcttagttagtcgtctctttttcacagg |
350 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40280191 |
tggtggaactgccatgctcttagttagtcgtctctttttcacagg |
40280235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 350
Target Start/End: Complemental strand, 40458459 - 40458115
Alignment:
| Q |
6 |
atttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaccgggtgca |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40458459 |
atttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaacgggtgca |
40458360 |
T |
|
| Q |
106 |
tgatcacacatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458359 |
cgatcacacatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactt |
40458260 |
T |
|
| Q |
206 |
tgcattcaagagttccagagatagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttagaagtggcccatgggaatgg |
305 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40458259 |
tgcattcaagagttccagagatagtattgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttcgaagtggcccatgggaatgg |
40458160 |
T |
|
| Q |
306 |
cggtggaactgtcatgctcttagttagtcgtctctttttcacagg |
350 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40458159 |
tggtggaactgccatgctcttagttagtcgtctctttttcacagg |
40458115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 40284859 - 40285165
Alignment:
| Q |
13 |
tttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattcatccattcaccgggtgcatgatcac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
40284859 |
tttctcttctttgtcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatccattcaccgggtgcacgatcac |
40284958 |
T |
|
| Q |
113 |
acatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagactttgcattc |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40284959 |
acatctcattccttctttcctctatgaaccttgtcactttcctgaaattctcaaccaaatcaaactgaatgtcttgttgaaacttacagaatttgcattc |
40285058 |
T |
|
| Q |
213 |
aagagttccagagatagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttagaagtggcccatgggaatggcggtgga |
312 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||||| |||||| ||||||| |||| | || ||||| ||||| |||||| |||| || ||||| |
|
|
| T |
40285059 |
aagagttccagagatagtctggagtttcaatacagataacaagtggtccagtgtgtacaaggtagcgcgttttgaagttgcccataggaacggtggtggt |
40285158 |
T |
|
| Q |
313 |
actgtca |
319 |
Q |
| |
|
||||||| |
|
|
| T |
40285159 |
actgtca |
40285165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1419 times since January 2019
Visitors: 2391