View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_high_26 (Length: 362)
Name: NF0218_high_26
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 29 - 292
Target Start/End: Original strand, 41735081 - 41735344
Alignment:
| Q |
29 |
aaaatgataatatttggcattatatatggtttccttagcgaagattataagcaaccatttcattaaactacgcttacaaaataaatcggtctccaaacaa |
128 |
Q |
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| T |
41735081 |
aaaatgataatatttggcattatatatggtttccttagcgaagattataagcaaccatttcattaaactacgcttacaaaataaatcggtctccaaacaa |
41735180 |
T |
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| Q |
129 |
taatttatttattttaatgacaaatgtttgttaatggagttgaacacatccttgnnnnnnnggagttgaacacatgattttcttatcaatctaaccctac |
228 |
Q |
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| T |
41735181 |
taatttatttattttaatgacaaatgtttgttaatggagttgaacacatccttgaaaaaaaggagttgaacacatgattttcttatcaatctaaccctac |
41735280 |
T |
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| Q |
229 |
acaattcttagtagattttctagcgacctgttttacgcttatgaggaaggaaatgacatatggg |
292 |
Q |
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| T |
41735281 |
acaattcttagtagattttctagcgacctgttttacgcttataaggaaggaaatgacatatggg |
41735344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 41735504 - 41735565
Alignment:
| Q |
296 |
attattctgccatacgcctttgttgtcgaaccctcactgaggagttacatggatcatgaaag |
357 |
Q |
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| T |
41735504 |
attattctaccatatgcctttgttgtcgaaccctcactgagaagttacatggatcatgaaag |
41735565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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