View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_high_27 (Length: 359)
Name: NF0218_high_27
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_27 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 136 - 359
Target Start/End: Original strand, 13041910 - 13042133
Alignment:
| Q |
136 |
caccatattttcttttctatatggagtagtgtcaaatccgagttcaatagcattaatgataattgtaattggatcattggtaccgaggaaaatattaatt |
235 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13041910 |
caccatattttctcttctatatggagtagtgtcaaatccgagttcaatagcattaatgataattgtaattggatcattggtaccggggaaaatattaatt |
13042009 |
T |
|
| Q |
236 |
tttggctggatacttggctggagaaacctattgccttcattctcaacttgccagaaaatgttcatggtattctaaaggacaaggtgtccgattttatgca |
335 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13042010 |
tttggctggatacttggctggagaaacttattgcctccattctcaatttgccagaaaatgttcatagtattctaaaggacaaggtgtccgattttatgca |
13042109 |
T |
|
| Q |
336 |
taattccatctggcatctaccaca |
359 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
13042110 |
taattccatctggcatctaccaca |
13042133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 579170 - 579303
Alignment:
| Q |
136 |
caccatattttcttttctatatggagtagtgtcaaatccgagttcaatagcattaatgataattgtaattggatcattggtaccgaggaaaatattaatt |
235 |
Q |
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||||||||||||| |||||| ||||| ||||| ||||| || |||| | ||| ||||| ||||| | |||||||| |||| | || |||||||||| |
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| T |
579170 |
caccatattttctcttctatttggagcagtgttaaatcagaaatcaacaacatcaatgacaattgcagctggatcataggtaatggagagaatattaatt |
579269 |
T |
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| Q |
236 |
tttggctggatacttggctggagaaacctattgc |
269 |
Q |
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||||||| ||||| ||| || | ||||||||||| |
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| T |
579270 |
tttggcttgatacctggatgaacaaacctattgc |
579303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 30 - 359
Target Start/End: Original strand, 38621439 - 38621778
Alignment:
| Q |
30 |
tacacacggttaacgaagctgctaacttgaagttgtgttgggacctcaaaaactcaatgaaagactgggccattcttttaaggagtaaggtatgcagagg |
129 |
Q |
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||||||| ||||| |||||| |||||||||||||||||||||| |||||||| || | | |||||||| |||||||| ||||||||||||| | |||||| |
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| T |
38621439 |
tacacacagttaatgaagctactaacttgaagttgtgttgggatctcaaaaattctaaggaagactggcccattcttctaaggagtaaggttttcagagg |
38621538 |
T |
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| Q |
130 |
taacaa----------caccatattttcttttctatatggagtagtgtcaaatccgagttcaatagcattaatgataattgtaattggatcattggtacc |
219 |
Q |
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|||||| || || ||||||| ||| ||||||||||||| ||||| |||| ||||| ||| |||||||||||||| ||||||||||||| |
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| T |
38621539 |
taacaaagtcatttcccatcacattttctcatctttatggagtagtgttaaatctgagtacaatatcatcaatgataattgtaactggatcattggtaat |
38621638 |
T |
|
| Q |
220 |
gaggaaaatattaatttttggctggatacttggctggagaaacctattgccttcattctcaacttgccagaaaatgttcatggtattctaaaggacaagg |
319 |
Q |
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| ||||||||| ||||||||||| || |||||| ||||||| |||||||| | || |||||| |||| ||||||||||||| ||| | || | ||||||| |
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| T |
38621639 |
ggggaaaatataaatttttggcttgacacttggttggagaatcctattgcttccactctcaatttgctagaaaatgttcatagtactttacaagacaagg |
38621738 |
T |
|
| Q |
320 |
tgtccgattttatgcataattccatctggcatctaccaca |
359 |
Q |
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|||| ||||| ||||||||||| | |||||||||||||| |
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| T |
38621739 |
tgtcagatttcatgcataattcaacttggcatctaccaca |
38621778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 23683911 - 23684044
Alignment:
| Q |
136 |
caccatattttcttttctatatggagtagtgtcaaatccgagttcaatagcattaatgataattgtaattggatcattggtaccgaggaaaatattaatt |
235 |
Q |
| |
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||||||||||||| |||||| ||||| ||||| ||||| || |||| | ||| ||||| ||||||| |||||||| |||| | || |||||||||| |
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| T |
23683911 |
caccatattttctcttctatttggagcagtgttaaatctgaaatcaacaacatcaatgacaattgtagctggatcataggtaatggagagaatattaatt |
23684010 |
T |
|
| Q |
236 |
tttggctggatacttggctggagaaacctattgc |
269 |
Q |
| |
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||||||| ||||| ||| |||| ||||||||||| |
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| T |
23684011 |
tttggcttgatacctggatggacaaacctattgc |
23684044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 136 - 269
Target Start/End: Complemental strand, 23850900 - 23850767
Alignment:
| Q |
136 |
caccatattttcttttctatatggagtagtgtcaaatccgagttcaatagcattaatgataattgtaattggatcattggtaccgaggaaaatattaatt |
235 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||| ||||| || |||| | ||| ||||| ||||||| |||||||| |||| | || |||||||||| |
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| T |
23850900 |
caccatattttctcttctatttggagcagtgttaaatctgaaatcaacaacatcaatgacaattgtagctggatcataggtaatggagagaatattaatt |
23850801 |
T |
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| Q |
236 |
tttggctggatacttggctggagaaacctattgc |
269 |
Q |
| |
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||||||| ||||| ||| |||| ||||||||||| |
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| T |
23850800 |
tttggcttgatacctggatggacaaacctattgc |
23850767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 9216266 - 9216581
Alignment:
| Q |
30 |
tacacacggttaacgaagctgctaacttgaagttgtgttgggacctcaaaaactcaatgaaagactgggccattcttttaaggagtaaggtatgcagagg |
129 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||| ||||| |||||||| |
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| T |
9216266 |
tacacacggttaatgaggctgccaacttgaagttgtgttgggatctcaaaaattcaatggaagactgggccattcttttacggagcaaggtctgcagagg |
9216365 |
T |
|
| Q |
130 |
taacaacaccat----------attttcttttctatatggagtagtgtcaaatccgagttcaatagcattaatgataattgtaattggatcattggtacc |
219 |
Q |
| |
|
|||||||| ||| ||||||| ||||| ||||||||||| ||||| |||||||||| ||| |||||||||||| |||||||||||||| |
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|
| T |
9216366 |
taacaacatcatttctcatcatattttctcatctatttggagtagtgttaaatctgagttcaataccatcaatgataattgttgttggatcattggtaat |
9216465 |
T |
|
| Q |
220 |
gaggaaaatattaatttttggctggatacttggctggagaaacctattgccttcattctcaacttgccagaaaatgttcatggtattctaaaggacaagg |
319 |
Q |
| |
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| |||||| |||||||| ||| ||||| ||||||| |||||||| ||||| | |||||| |||||||| |||| |||||| |||| |||||||||||| |
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| T |
9216466 |
ggggaaaaaattaatttctggttggattcttggcttgagaaaccgattgcttccattcttaacttgcctgaaactgttcacggtaacttaaaggacaagg |
9216565 |
T |
|
| Q |
320 |
tgtccgattttatgca |
335 |
Q |
| |
|
||| |||||| |||| |
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|
| T |
9216566 |
tgtgtgattttttgca |
9216581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 27460128 - 27460204
Alignment:
| Q |
44 |
gaagctgctaacttgaagttgtgttgggacctcaaaaactcaatgaaagactgggccattcttttaaggagtaaggt |
120 |
Q |
| |
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|||||||| ||| | ||||| |||||||| |||||||| |||| ||||||||||||||||| |||| |||||||| |
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| T |
27460128 |
gaagctgcaaaccttaagttctgttgggatctcaaaaattcaaatgaagactgggccattcttctaagaagtaaggt |
27460204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 27447779 - 27447853
Alignment:
| Q |
46 |
agctgctaacttgaagttgtgttgggacctcaaaaactcaatgaaagactgggccattcttttaaggagtaaggt |
120 |
Q |
| |
|
|||||| ||| | ||||| |||||||| |||||||| |||| ||||||||||||||||| |||| |||||||| |
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|
| T |
27447779 |
agctgcaaaccttaagttctgttgggatctcaaaaattcaaatgaagactgggccattcttctaagaagtaaggt |
27447853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 269
Target Start/End: Original strand, 48709367 - 48709496
Alignment:
| Q |
140 |
atattttcttttctatatggagtagtgtcaaatccgagttcaatagcattaatgataattgtaattggatcattggtaccgaggaaaatattaatttttg |
239 |
Q |
| |
|
||||||||| |||||| ||||| ||||| ||||| || |||| | ||| ||||| ||||| | |||||||| |||| | || |||||||||||||| |
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|
| T |
48709367 |
atattttctcttctatttggagcagtgttaaatcagaaatcaacaacatcaatgacaattgcagctggatcataggtaatggagagaatattaatttttg |
48709466 |
T |
|
| Q |
240 |
gctggatacttggctggagaaacctattgc |
269 |
Q |
| |
|
||| ||||| ||| | || ||||||||||| |
|
|
| T |
48709467 |
gcttgatacctggattgacaaacctattgc |
48709496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 269
Target Start/End: Complemental strand, 14776307 - 14776174
Alignment:
| Q |
136 |
caccatattttcttttctatatggagtagtgtcaaatccgagttcaatagcattaatgataattgtaattggatcattggtaccgaggaaaatattaatt |
235 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||| ||||| || |||| | ||| ||||| ||||| | |||||||| |||| | || |||||||||| |
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| T |
14776307 |
caccatattttctcttctatttggagcagtgttaaatcagaaatcaacaacatcaatgacaattgcagctggatcataggtaacagagagaatattaatt |
14776208 |
T |
|
| Q |
236 |
tttggctggatacttggctggagaaacctattgc |
269 |
Q |
| |
|
||| ||| ||||| ||| |||| ||| ||||||| |
|
|
| T |
14776207 |
tttagcttgatacctggatggacaaatctattgc |
14776174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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