View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0218_high_29 (Length: 357)

Name: NF0218_high_29
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0218_high_29
NF0218_high_29
[»] chr8 (5 HSPs)
chr8 (20-357)||(24633473-24633810)
chr8 (182-351)||(33592486-33592658)
chr8 (182-351)||(33602125-33602297)
chr8 (106-351)||(42896501-42896742)
chr8 (297-329)||(12925041-12925073)
[»] chr1 (6 HSPs)
chr1 (106-351)||(21919782-21920023)
chr1 (297-351)||(3471394-3471446)
chr1 (175-234)||(26906728-26906786)
chr1 (299-333)||(21633318-21633352)
chr1 (297-329)||(14272483-14272515)
chr1 (297-329)||(14282349-14282381)
[»] scaffold0053 (2 HSPs)
scaffold0053 (182-357)||(2606-2785)
scaffold0053 (106-150)||(2810-2854)
[»] chr5 (7 HSPs)
chr5 (106-357)||(22448675-22448923)
chr5 (247-357)||(22457993-22458106)
chr5 (106-263)||(22458115-22458265)
chr5 (257-333)||(11222978-11223054)
chr5 (297-333)||(20834119-20834155)
chr5 (297-333)||(33955964-33956000)
chr5 (297-333)||(20035676-20035712)
[»] scaffold0334 (1 HSPs)
scaffold0334 (182-351)||(12895-13067)
[»] chr7 (5 HSPs)
chr7 (259-333)||(14635202-14635276)
chr7 (259-333)||(14644902-14644976)
chr7 (297-333)||(33292626-33292662)
chr7 (106-150)||(13870874-13870918)
chr7 (297-329)||(15947841-15947873)
[»] chr3 (2 HSPs)
chr3 (259-333)||(46306046-46306120)
chr3 (259-330)||(5385330-5385401)
[»] chr6 (2 HSPs)
chr6 (297-333)||(23884193-23884229)
chr6 (259-333)||(22065956-22066030)
[»] scaffold0021 (1 HSPs)
scaffold0021 (297-330)||(142847-142880)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 24633473 - 24633810
Alignment:
Q  20 gacatcatcaaatcacatccaagtagctgttgcaagctcacaagttgctggcaaacgcgtgactcactcccaaagcttgctgaatctttcaagaacgttc 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24633473 gacatcatcaagtcacatccaagtagctgttgcaagctcacaagttgctggcaaacgcgtgactcactcccaaagcttgctgaatctttcaagaacgttc 24633572  T
Q  120 tggactgactcaagagcattctgcaagtgtannnnnnnnncttcatatatttcaatcaagctaaagtttggagcgtaaacttcattcaaattaaaggaaa 219  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24633573 tggactgactcaagagcattctgcaagtgtatttttttttcttcatatatttcaatcaagctaaagtttggagtgtaaacttcattcaaattaaaggaaa 24633672  T
Q  220 gggcaactgttttattgattggggaacaagtctttgacttctataaatagaggaagacctccaaggctaaaaccaatagtttgaaatacaaagcatttat 319  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  24633673 gggcaattgttttattgattggggaacaagtctttgacttctataaatagaggaagacatccaaggctaaaaccaagagtttgaaatacaaagcatttat 24633772  T
Q  320 ctatctcaaagcaaccaaattatcaatctctttatcaa 357  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  24633773 ctatctcaaagcaaacaaattatcaatctcttcatcaa 24633810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 351
Target Start/End: Complemental strand, 33592658 - 33592486
Alignment:
Q  182 aaagtttggagcgtaaacttca--ttcaaattaaaggaaagggcaactgttttattgattggggaacaagtctttgacttctataaatagaggaagacct 279  Q
    ||||||||||||| ||||||||  |||||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  33592658 aaagtttggagcgcaaacttcaaattcaaattaaaggaaaggacagctggtttattgattggggaacaagtctttggcttctataaatagaggaagacat 33592559  T
Q  280 ccaaggctaaaaccaatagtttgaaatac-aaagcatttatctatctcaaagcaaccaaattatcaatctctt 351  Q
    ||||||| |||||||| |||||||||||| ||||||||||||| || |||||||| |||  ||||||||||||    
T  33592558 ccaaggcaaaaaccaagagtttgaaatacaaaagcatttatctttcacaaagcaaacaagctatcaatctctt 33592486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 182 - 351
Target Start/End: Complemental strand, 33602297 - 33602125
Alignment:
Q  182 aaagtttggagcgtaaacttca--ttcaaattaaaggaaagggcaactgttttattgattggggaacaagtctttgacttctataaatagaggaagacct 279  Q
    ||||||||||||| ||||||||  |||||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  33602297 aaagtttggagcgcaaacttcaaattcaaattaaaggaaaggacagctggtttattgattggggaacaagtctttggcttctataaatagaggaagacat 33602198  T
Q  280 ccaaggctaaaaccaatagtttgaaatac-aaagcatttatctatctcaaagcaaccaaattatcaatctctt 351  Q
    ||||||| |||||||| |||||||||||| ||||||||||||| || |||||||| |||  ||||||||||||    
T  33602197 ccaaggcaaaaaccaagagtttgaaatacaaaagcatttatctttcacaaagcaaacaagctatcaatctctt 33602125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 106 - 351
Target Start/End: Complemental strand, 42896742 - 42896501
Alignment:
Q  106 tttcaagaacgttctggactgactcaagagcattctgcaagtgtannnnnnnnncttcatatatttcaatcaagctaaagtttggagcgtaaacttca-- 203  Q
    ||||||||||||||||||| | ||||||| |||| ||||||||||          ||||||  |||| | ||||| ||||||||||||| ||||||||      
T  42896742 tttcaagaacgttctggacaggctcaagaacattttgcaagtgtatttt------ttcatacctttccaacaagc-aaagtttggagcgcaaacttcaaa 42896650  T
Q  204 ttcaaattaaaggaaagggcaactgttttattgattggggaacaagtctttgacttctataaatagaggaagacctccaaggctaaaaccaatagtttga 303  Q
    |||||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| |||||||    
T  42896649 ttcaaattaaaggaaaggacagctggtttattgattggggaacaagtctttggcttctataaatagaggaagacatccaaggcaaaaaccaagagtttga 42896550  T
Q  304 aatac-aaagcatttatctatctcaaagcaaccaaattatcaatctctt 351  Q
    ||||| ||| ||||||||| || |||||||| |||  ||||||||||||    
T  42896549 aatacaaaaacatttatctttcacaaagcaaacaagctatcaatctctt 42896501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 12925041 - 12925073
Alignment:
Q  297 agtttgaaatacaaagcatttatctatctcaaa 329  Q
    ||||||||||||||||||||||||| |||||||    
T  12925041 agtttgaaatacaaagcatttatctctctcaaa 12925073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 106 - 351
Target Start/End: Complemental strand, 21920023 - 21919782
Alignment:
Q  106 tttcaagaacgttctggactgactcaagagcattctgcaagtgtannnnnnnnncttcatatatttcaatcaagctaaagtttggagcgtaaacttca-- 203  Q
    |||||||||||||||| || | ||||||| |||||||||||||||          ||||||  |||| | ||||| ||||||||||||| ||||||||      
T  21920023 tttcaagaacgttctgtacaggctcaagaacattctgcaagtgtatttt------ttcatacctttccaacaagc-aaagtttggagcgcaaacttcaaa 21919931  T
Q  204 ttcaaattaaaggaaagggcaactgttttattgattggggaacaagtctttgacttctataaatagaggaagacctccaaggctaaaaccaatagtttga 303  Q
    |||||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| |||||||    
T  21919930 ttcaaattaaaggaaaggacagctggtttattgattggggaacaagtctttggcttctataaatagaggaagacatccaaggcaaaaaccaagagtttga 21919831  T
Q  304 aatac-aaagcatttatctatctcaaagcaaccaaattatcaatctctt 351  Q
    ||||| ||||||||||||| ||||||||||| |||| ||||||||||||    
T  21919830 aatacaaaagcatttatctctctcaaagcaaacaaactatcaatctctt 21919782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 3471446 - 3471394
Alignment:
Q  297 agtttgaaatacaaagcatttatctatctcaaagcaaccaaattatcaatctctt 351  Q
    ||||||||||||||||||||||||| |||||||||||  ||| ||||||||||||    
T  3471446 agtttgaaatacaaagcatttatctctctcaaagcaa--aaactatcaatctctt 3471394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 26906786 - 26906728
Alignment:
Q  175 tcaagctaaagtttggagcgtaaacttcattcaaattaaaggaaagggcaactgttttat 234  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||||| |||||| |||||    
T  26906786 tcaagcaaaagtttggagcgtaaa-ttcattcaaattaaagcaaaggccaactggtttat 26906728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 21633318 - 21633352
Alignment:
Q  299 tttgaaatacaaagcatttatctatctcaaagcaa 333  Q
    ||||||||||||||||||||||| |||||||||||    
T  21633318 tttgaaatacaaagcatttatctctctcaaagcaa 21633352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 14272515 - 14272483
Alignment:
Q  297 agtttgaaatacaaagcatttatctatctcaaa 329  Q
    ||||||||||||||||||||||||| |||||||    
T  14272515 agtttgaaatacaaagcatttatctctctcaaa 14272483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 14282381 - 14282349
Alignment:
Q  297 agtttgaaatacaaagcatttatctatctcaaa 329  Q
    ||||||||||||||||||||||||| |||||||    
T  14282381 agtttgaaatacaaagcatttatctctctcaaa 14282349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 182 - 357
Target Start/End: Complemental strand, 2785 - 2606
Alignment:
Q  182 aaagtttggagcgtaaacttca-ttcaaattaaaggaaagggcaactgttttattgattggggaacaagtctttgacttctataaatagaggaagacctc 280  Q
    ||||||||||||| |||||| | || ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  2785 aaagtttggagcgcaaacttaaatttaaattaaaggaaaggacaactgttttattgattggggaacaagtctttggcttctataaatagaggaagacatc 2686  T
Q  281 caaggctaaaaccaatagtttgaaatac-aaagcattta--tctatctcaaagcaaccaaattatcaatctctttatcaa 357  Q
    ||||||||||| ||| |||||||||||| ||||||||||  ||| ||||||||||| |||  ||||||| |||| |||||    
T  2685 caaggctaaaatcaagagtttgaaatacaaaagcatttatctctctctcaaagcaaacaagctatcaatttcttcatcaa 2606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 2854 - 2810
Alignment:
Q  106 tttcaagaacgttctggactgactcaagagcattctgcaagtgta 150  Q
    ||||||||||||||||||| | ||||||| |||||||||||||||    
T  2854 tttcaagaacgttctggacaggctcaagaacattctgcaagtgta 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 106 - 357
Target Start/End: Complemental strand, 22448923 - 22448675
Alignment:
Q  106 tttcaagaacgttctggactgactcaagagcattctgcaagtgtannnnnnnnncttcatatatttcaatcaagctaaagtttggagcgtaaacttca-t 204  Q
    ||||||||||||||||||| | ||||||| |||||||||||||||          ||||||  |||| | ||||| ||||||||||||| |||||| | |    
T  22448923 tttcaagaacgttctggacaggctcaagaacattctgcaagtgtatttt------ttcatacctttccaacaagc-aaagtttggagcgcaaacttaaat 22448831  T
Q  205 tcaaattaaaggaaagggcaactgttttattgattggggaacaagtctttgacttctataaatagaggaagacctccaaggctaaaaccaatagtttgaa 304  Q
    ||||||| ||||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||| |||| ||| ||||||||    
T  22448830 tcaaatttaaggaaaggacaactgttttattgattggagaagaagtctttggcttctataaatagaggaagacatccaaggcaaaaatcaagagtttgaa 22448731  T
Q  305 atac-aaagcattta--tctatctcaaagcaaccaaattatcaatctctttatcaa 357  Q
    |||| ||||||||||  ||| ||||||||||| |||  |||||||||||| |||||    
T  22448730 atacaaaagcatttatctctctctcaaagcaaacaagctatcaatctcttcatcaa 22448675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 22458106 - 22457993
Alignment:
Q  247 aagtctttgacttctataaatagaggaagacctccaaggctaaaaccaatagtttgaaatac-aaagcattta--tctatctcaaagcaaccaaattatc 343  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||| ||| |||||||||||| ||||||||||  ||| ||||||||||| |||  ||||    
T  22458106 aagtctttggcttctataaatagaggaagacatccaaggcaaaaatcaagagtttgaaatacaaaagcatttatctctctctcaaagcaaacaagctatc 22458007  T
Q  344 aatctctttatcaa 357  Q
    |||||||| |||||    
T  22458006 aatctcttcatcaa 22457993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 263
Target Start/End: Complemental strand, 22458265 - 22458115
Alignment:
Q  106 tttcaagaacgttctggactgactcaagagcattctgcaagtgtannnnnnnnncttcatatatttcaatcaagctaaagtttggagcgtaaacttca-t 204  Q
    |||||||||| |||||||| | ||||||| |||||||||||||||          ||||||  |||| | ||||| ||||||||||||| |||||| | |    
T  22458265 tttcaagaacattctggacaggctcaagaacattctgcaagtgtatttt------ttcatacctttccaacaagc-aaagtttggagcgcaaacttaaat 22458173  T
Q  205 tcaaattaaaggaaagggcaactgttttattgattggggaacaagtctttgacttctat 263  Q
    |||||||||||||| || ||| ||||||||||||||| ||| ||||||||| |||||||    
T  22458172 tcaaattaaaggaa-ggacaattgttttattgattggagaagaagtctttggcttctat 22458115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 11222978 - 11223054
Alignment:
Q  257 cttctataaatagaggaagacctccaaggctaaaaccaatagtttgaaatacaaagcatttatctatctcaaagcaa 333  Q
    ||||||||||||||||| | |    |||| ||||| ||| ||||||||| ||||||||||||||| |||||||||||    
T  11222978 cttctataaatagaggacgtctatgaaggttaaaagcaagagtttgaaacacaaagcatttatctctctcaaagcaa 11223054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 20834119 - 20834155
Alignment:
Q  297 agtttgaaatacaaagcatttatctatctcaaagcaa 333  Q
    ||||||||||||||||||||||||| |||||||||||    
T  20834119 agtttgaaatacaaagcatttatctctctcaaagcaa 20834155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 33956000 - 33955964
Alignment:
Q  297 agtttgaaatacaaagcatttatctatctcaaagcaa 333  Q
    ||||||||||||||||||||||||| |||||||||||    
T  33956000 agtttgaaatacaaagcatttatctctctcaaagcaa 33955964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 20035676 - 20035712
Alignment:
Q  297 agtttgaaatacaaagcatttatctatctcaaagcaa 333  Q
    |||||||||| |||||||||||||| |||||||||||    
T  20035676 agtttgaaatgcaaagcatttatctctctcaaagcaa 20035712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 182 - 351
Target Start/End: Complemental strand, 13067 - 12895
Alignment:
Q  182 aaagtttggagcgtaaacttca--ttcaaattaaaggaaagggcaactgttttattgattggggaacaagtctttgacttctataaatagaggaagacct 279  Q
    ||||||||||||| ||||||||  |||||||||||||||||| || ||| ||||||||||||||||||| | |||| |||||||||||||||||||||      
T  13067 aaagtttggagcgcaaacttcaaattcaaattaaaggaaaggacagctgatttattgattggggaacaaatttttggcttctataaatagaggaagacaa 12968  T
Q  280 ccaaggctaaaaccaatagtttgaaatac-aaagcatttatctatctcaaagcaaccaaattatcaatctctt 351  Q
      ||||| |||||||| |||||||||||| ||||||||||||| ||||||||||| |||  ||||||||||||    
T  12967 ataaggcgaaaaccaagagtttgaaatacaaaagcatttatctctctcaaagcaaacaagctatcaatctctt 12895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 14635276 - 14635202
Alignment:
Q  259 tctataaatagaggaagacctccaaggctaaaaccaatagtttgaaatacaaagcatttatctatctcaaagcaa 333  Q
    |||||||||||| || ||| |  ||||  |||| ||| ||||||||||||||||||||||||| |||||||||||    
T  14635276 tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaagcatttatctctctcaaagcaa 14635202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 14644976 - 14644902
Alignment:
Q  259 tctataaatagaggaagacctccaaggctaaaaccaatagtttgaaatacaaagcatttatctatctcaaagcaa 333  Q
    |||||||||||| || ||| |  ||||  |||| ||| ||||||||||||||||||||||||| |||||||||||    
T  14644976 tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaagcatttatctctctcaaagcaa 14644902  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 33292662 - 33292626
Alignment:
Q  297 agtttgaaatacaaagcatttatctatctcaaagcaa 333  Q
    ||||||||||||||||||||||||| |||||||||||    
T  33292662 agtttgaaatacaaagcatttatctctctcaaagcaa 33292626  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 13870874 - 13870918
Alignment:
Q  106 tttcaagaacgttctggactgactcaagagcattctgcaagtgta 150  Q
    |||||||||||||||| || | ||||||| |||||||||||||||    
T  13870874 tttcaagaacgttctgtacaggctcaagaacattctgcaagtgta 13870918  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 15947873 - 15947841
Alignment:
Q  297 agtttgaaatacaaagcatttatctatctcaaa 329  Q
    ||||||||||||||||||||||||| |||||||    
T  15947873 agtttgaaatacaaagcatttatctctctcaaa 15947841  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 46306120 - 46306046
Alignment:
Q  259 tctataaatagaggaagacctccaaggctaaaaccaatagtttgaaatacaaagcatttatctatctcaaagcaa 333  Q
    |||||||||||| || ||| |  ||||  |||| ||| ||||||||||||||||||||||||| |||||||||||    
T  46306120 tctataaatagaagaggacattgaaggagaaaagcaacagtttgaaatacaaagcatttatctctctcaaagcaa 46306046  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 5385330 - 5385401
Alignment:
Q  259 tctataaatagaggaagacctccaaggctaaaaccaatagtttgaaatacaaagcatttatctatctcaaag 330  Q
    |||||||||||| |||||| |  ||||  |||| ||| |||||||||||||||| |||||||| ||||||||    
T  5385330 tctataaatagaagaagacattgaaggagaaaagcaagagtttgaaatacaaagtatttatctctctcaaag 5385401  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 23884193 - 23884229
Alignment:
Q  297 agtttgaaatacaaagcatttatctatctcaaagcaa 333  Q
    ||||||||||||||||||||||||| |||||||||||    
T  23884193 agtttgaaatacaaagcatttatctctctcaaagcaa 23884229  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 22065956 - 22066030
Alignment:
Q  259 tctataaatagaggaagacctccaaggctaaaaccaatagtttgaaatacaaagcatttatctatctcaaagcaa 333  Q
    |||||||||||| || ||| |  ||||  |||| ||| ||||||||||||||||||||||| | |||||||||||    
T  22065956 tctataaatagaagaggacattgaaggagaaaagcaagagtttgaaatacaaagcatttatttctctcaaagcaa 22066030  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 142847 - 142880
Alignment:
Q  297 agtttgaaatacaaagcatttatctatctcaaag 330  Q
    ||||||||||||||||||||||||| ||||||||    
T  142847 agtttgaaatacaaagcatttatctctctcaaag 142880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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