View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0218_high_39 (Length: 260)
Name: NF0218_high_39
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_39 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 4042527 - 4042295
Alignment:
| Q |
29 |
aatatgtttcatgtgatggtggatacagtttgacatcattgaatggtcaaaaccagtttaacttggcaaaattgtgtaacttgaaa--tgttaattaagg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
4042527 |
aatatgtttcatgtgatggtggatacagtttgacatcattgaatggtcaaaaccagtttaacttagcaaaattgtgtaacttgaaatgtgttaattaagg |
4042428 |
T |
|
| Q |
127 |
tacttttggaatagggcttaatcaaaaccataaaaagtacagaacttcagagaaactttggatttaaaagtgaactgacannnnnnnnnnaaaattaaaa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
4042427 |
tacttttggaatagggcttaatcaaaaccataaaaagtatagaacttcagagaaactttggatttaaaagtgaa-tgacatttttttttataaattaaat |
4042329 |
T |
|
| Q |
227 |
agattccataaaaatcttcatatctgagagttat |
260 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||| |
|
|
| T |
4042328 |
aggttccataaaaatcttcatatctgaaagttat |
4042295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 4118149 - 4118252
Alignment:
| Q |
30 |
atatgtttcatgtgatggtggatacagtttgacatcattgaatggtcaaaaccagtttaacttggcaaaattgtgtaacttgaaatgttaattaaggtac |
129 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||| || | |||||||||||||| | ||||||||| ||||||| |
|
|
| T |
4118149 |
atatgtttcatgtgatggtatataaagtttgacatcattgtatggtcaaaactagttcaattcaacaaaattgtgtaaccttaaatgttaaataaggtat |
4118248 |
T |
|
| Q |
130 |
tttt |
133 |
Q |
| |
|
|||| |
|
|
| T |
4118249 |
tttt |
4118252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 4118448 - 4118507
Alignment:
| Q |
145 |
taatcaaaaccataaaaa-gtacagaacttcagagaaactttggatttaaaagtgaactg |
203 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||| || ||||||||||||||||||||| |
|
|
| T |
4118448 |
taatcaaaaccataaaaatgtatagaacttcggaggaaatttggatttaaaagtgaactg |
4118507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1459 times since January 2019
Visitors: 2391