View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_high_40 (Length: 260)
Name: NF0218_high_40
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 42 - 189
Target Start/End: Original strand, 15595839 - 15595987
Alignment:
| Q |
42 |
cgacggtaataaatcttctcgtgaagaggattcttcttctgattctgtttccacggccctcgttcccgttgctccttcacatttcactctcaaaaacatt |
141 |
Q |
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| T |
15595839 |
cgacggtaataaatcttctcgtgaagaggattcttcttctgactctgtttccacggccctcgttcccgtcgctccttcacatttcactctcaaaaacatt |
15595938 |
T |
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| Q |
142 |
gcaagt-aaatcgacctcttggatattctcatcgtagccggagttggta |
189 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15595939 |
gcaagtcaaatcgacctcttggatattctcatcgtagccggagttggta |
15595987 |
T |
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