View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_high_45 (Length: 253)
Name: NF0218_high_45
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_45 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 42188915 - 42188992
Alignment:
| Q |
176 |
cttaatgtggtggtggccttgttttaatttaagtgcatgtagtgggaaaacaagaacaagcataaattaaaggatccc |
253 |
Q |
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| T |
42188915 |
cttaatgtggtggtggccttgttttaatttaagtgcatgtagtgggaaaacaagaacaagcataaattaaaggatccc |
42188992 |
T |
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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 39634800 - 39634941
Alignment:
| Q |
38 |
cagcttcgacgggaatgacttttgggtgtcaaacttaattttaaaaacagctacccaaacaccaannnnnnnagcagaatcctttttaggatggctagac |
137 |
Q |
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| T |
39634800 |
cagcttcgactggaatgacttttgggtgtcaaactcaattttaaaaatggctacccaaacaccaatttttttagcagattcacttttaggatggttaaac |
39634899 |
T |
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| Q |
138 |
tcacgtttgcagctccccaccgcacaaccaaacaaatactta |
179 |
Q |
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| T |
39634900 |
tcacgtttgcagttccccaccgcataaccaaacgagtactta |
39634941 |
T |
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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 2484553 - 2484701
Alignment:
| Q |
33 |
cataccagcttcgacgggaatgacttttgggtgtcaaacttaattttaaaaacagctacccaaacaccaannnnnnnagcagaatcctttttaggatggc |
132 |
Q |
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| T |
2484553 |
catagcagcttcgactgaaatcacttttgggggtcaaactcaattttaaaaatagctacccaaacaccaatttttttagcagattcacttttaggatggc |
2484652 |
T |
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| Q |
133 |
tagactcacgtttgcagctccccaccgcacaaccaaacaaatacttaat |
181 |
Q |
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| T |
2484653 |
tagactcacgtttgcagttctccaccgcataaccaaacgagtacttaat |
2484701 |
T |
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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 16613808 - 16613746
Alignment:
| Q |
185 |
gtggtggccttgttttaatttaagtgcatgtagtgggaaaacaagaacaagcataaattaaag |
247 |
Q |
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| T |
16613808 |
gtggtgtctttgttttaatttaagtgcatgtagtgggaaaacaagaacaagcataaattaaag |
16613746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 1702804 - 1702742
Alignment:
| Q |
185 |
gtggtggccttgttttaatttaagtgcatgtagtgggaaaacaagaacaagcataaattaaag |
247 |
Q |
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| T |
1702804 |
gtggtgtctttgttttaatttaagtacatgtagtgggaaaacaagaacaagcataaattaaag |
1702742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 9991456 - 9991400
Alignment:
| Q |
185 |
gtggtggccttgttttaatttaagtgcatgtagtgggaaaacaagaacaagcataaa |
241 |
Q |
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| T |
9991456 |
gtggtgtctttgttttaatttaagtgcatgtagtgggaaaacaagaacaagcataaa |
9991400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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