View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0218_high_60 (Length: 207)
Name: NF0218_high_60
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_high_60 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0286 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 21637 - 21537
Alignment:
| Q |
5 |
aacataagatgaggaaaatgaaatcactacacctactccgaatgagctatgaaactcaattgttgtaaggctactctcacgtaaccggcatatggaaagt |
104 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21637 |
aacataagatgaggaaaatgaaatgactacacctactccgaataagctatgaaactcaattgttgtaaggctactctcacgtaaccggcatatggaaagt |
21538 |
T |
|
| Q |
105 |
t |
105 |
Q |
| |
|
| |
|
|
| T |
21537 |
t |
21537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 2172406 - 2172506
Alignment:
| Q |
5 |
aacataagatgaggaaaatgaaatcactacacctactccgaatgagctatgaaactcaattgttgtaaggctactctcacgtaaccggcatatggaaagt |
104 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2172406 |
aacataagatgaggaaaatgaaatgactacacctactccgaataagctatgaaactcaattgttgtaaggctactctcacgtaaccggcatatggaaagt |
2172505 |
T |
|
| Q |
105 |
t |
105 |
Q |
| |
|
| |
|
|
| T |
2172506 |
t |
2172506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 2186989 - 2186893
Alignment:
| Q |
10 |
aagatgaggaaaatgaaatcactacacctactccgaatgagctatgaaactcaattgttgtaaggctactctcacgtaaccggcatatggaaagttt |
106 |
Q |
| |
|
|||||||||||||||||| || |||||||||| | |||||||| ||||||||| ||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
2186989 |
aagatgaggaaaatgaaaacattacacctactttggatgagctaggaaactcaaatgttgtaaggctactttcacgtaacctgcatatggaaagttt |
2186893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2269 times since January 2019
Visitors: 2400