View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_10 (Length: 507)
Name: NF0218_low_10
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 29 - 502
Target Start/End: Original strand, 46937898 - 46938372
Alignment:
| Q |
29 |
agtaccaacctggccaggcgtaattagtcccttctcctctgcatcagcaatcatactatagccaatcctacatttataacatacattgcaaaggcgaaaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46937898 |
agtaccaacctggccaggcgtaattagtcccttctcctctgcatcagcaatcatactatagccaatcctacatttataacatacattgcaaaggcgaaaa |
46937997 |
T |
|
| Q |
129 |
a-gtcaaaagccaattcaaaagaatgttgctcacaaaagcaagaaccaaaactcaaataatatatgagtactattggaagaaacctaaatgattacctgt |
227 |
Q |
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| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46937998 |
aagtcacaagccaattcaaaagaatgttgctcacaaaagcaagaaccaaaactcaaataatatatgagtactattggaagaaacctaaatgattacctgt |
46938097 |
T |
|
| Q |
228 |
ctttcacactagagcatggttccattaattccagtttggcagcaacccgagcaacagaaccatccgcgattttattcagatatactaatggggtattccc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46938098 |
ctttcacactagagcatggttccattaattccagtttggcagcaacccgagcaacagaaccatccgcgattttattcagatatactaatggggtattccc |
46938197 |
T |
|
| Q |
328 |
gatcaactatacataataaacaacatatatcagtatgtaatccacaataagaaacatttaattggaaagaaaacacattaaaatatcacacagaatgtca |
427 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46938198 |
gatcaactatacataataaacaacatatattagtatgtaatccacaataagaaacatttaattggaaagaaaacacattaaaatatcacacagaatgtca |
46938297 |
T |
|
| Q |
428 |
tcaaaatacacaaactcacttctgtaacatctttggcaattccagacctttcaactgccatggtttcatctcact |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46938298 |
tcaaaatacacaaactcacttctgtaacatctttggcaattccagacctttcaactgccatggtttcagctcact |
46938372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 336
Target Start/End: Complemental strand, 861579 - 861462
Alignment:
| Q |
219 |
attacctgtctttcacactagagcatggttccattaattccagtttggcagcaacccgagcaacagaaccatccgcgattttattcagatatactaatgg |
318 |
Q |
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||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||| || | | |||| ||||| ||||| || |
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| T |
861579 |
attacctgtcttttacactagagcatggctccatcaattccagtttggcagcaactcgagcaacacaaccatctgcaagtctatttagatacactaacgg |
861480 |
T |
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| Q |
319 |
ggtattcccgatcaacta |
336 |
Q |
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||| || || |||||||| |
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| T |
861479 |
ggttttgccaatcaacta |
861462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 502
Target Start/End: Complemental strand, 861378 - 861315
Alignment:
| Q |
439 |
aaactcacttctgtaacatctttggcaattccagacctttcaactgccatggtttcatctcact |
502 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| || |||||| | ||| |||||| |
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| T |
861378 |
aaactcacttctgtaacatctttagcaattccagacctttcgaccgccatgttatcagctcact |
861315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 861772 - 861707
Alignment:
| Q |
32 |
accaacctggccaggcgtaattagtcccttctcctctgcatcagcaatcatactatagccaatcct |
97 |
Q |
| |
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||||||||| ||||| || || || |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
861772 |
accaacctgtccaggtgtgataagccccttctcttctgcatcagcaatcatactgtagccaatcct |
861707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 481
Target Start/End: Complemental strand, 21748710 - 21748667
Alignment:
| Q |
438 |
caaactcacttctgtaacatctttggcaattccagacctttcaa |
481 |
Q |
| |
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||||||||||| |||||||||| | ||||||||||||||||||| |
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| T |
21748710 |
caaactcacttttgtaacatctatcgcaattccagacctttcaa |
21748667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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