View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0218_low_16 (Length: 455)
Name: NF0218_low_16
Description: NF0218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0218_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 7197961 - 7197553
Alignment:
| Q |
20 |
tacaaatcgtcgtataatttgggatctaggaagtactaaataaatagaaaaacttatacaaggagtacataaatcgagtgagtattaataacttaaccta |
119 |
Q |
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| T |
7197961 |
tacaaatcgtcgtgtaatttgggatctaggaagtactaaataaatagaaaaacttatacaaggagtacataaatctagtgagtattaataacttaaccta |
7197862 |
T |
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| Q |
120 |
aaaggtatctaatcaaattatattcgttggttaaagagtaattat-ggagaaagataagttttcctgttatgtgagatttacatgtaaatggaaatgaac |
218 |
Q |
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| T |
7197861 |
aaaggtatctaatcaaattatattcgttggttaaagagtaattataggagaaagataagttttcctgttatgtgagatttacatgtaaatggaaatgaac |
7197762 |
T |
|
| Q |
219 |
ttcataggcatctagattagatagattggaaagtaaacctttgtatggtattgggactaatataactagttaattcagtattttgaggtagtgcaaattt |
318 |
Q |
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| T |
7197761 |
ttcataggcatctagattagatagattggaaagtaaacctttgtatggtattgggactgatataactagttaattcagtgttttgaggtagtgcaaattt |
7197662 |
T |
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| Q |
319 |
gattttagttgaaaacgggtttgaactgaatggttatgtctagatttcaatcactccaatgtaaaagttacatagagttgcatttaccagctagaatcgt |
418 |
Q |
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| T |
7197661 |
gattttagttgaaaatgggtttgaaccgaatggttatgtctagatttcaatcactccaatgtaaaagttacatagagttgcatttaccagctagaatcgt |
7197562 |
T |
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| Q |
419 |
gttataatt |
427 |
Q |
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| T |
7197561 |
gttataatt |
7197553 |
T |
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